View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_2 (Length: 406)
Name: NF10638_low_2
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Complemental strand, 43553163 - 43552783
Alignment:
| Q |
11 |
caaaggaaaaattgaaaatgtgaatcatactaagaggaaacactatcatgagatgcaccaagaggcattactaaatgcaagaaacaccattgtattagtg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
43553163 |
caaaggaaaaattgaaaatgtgaatcatactaagaggaaacactatcatgagatgcaccaagaggcattactaaatgcaagaaacactattgtgttagtg |
43553064 |
T |
|
| Q |
111 |
gctgttttaattgccaccgtaacttttgctgctggtattagtccacctggtggtgtgtaccaagaaggaccaatgagaggcaaatcaatggttggtagaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553063 |
gctgttttaattgccaccgtaacttttgctgctggtattagtccacctggtggtgtgtaccaagaaggaccaatgagaggcaaatcaatggttggtagaa |
43552964 |
T |
|
| Q |
211 |
catcagcttttaaggtatttgcgattagcaataacatagccctcttcacctctttatctgtagttattgttcttgttagtatcgttccatttagaagaaa |
310 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43552963 |
catcagcttttaaggtatttgcgataagcaataacatagccctcttcacctctttatctgtagttattgttcttgttagtatcgttccatttagaagaaa |
43552864 |
T |
|
| Q |
311 |
accacaaacattattgttgatcattgctcacaaggttatgtgggtagctgtggccttcatggcaactggctatgttgcagc |
391 |
Q |
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| T |
43552863 |
accacaaacattattgttgatcattgctcacaaggttatgtgggtagctgtggccttcatggcaactggctatgttgcagc |
43552783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 43549165 - 43548784
Alignment:
| Q |
11 |
caaaggaaaaattgaaaatgtgaatcatactaagaggaaacactatcatgagatgcaccaagaggcattactaaatgcaagaaacaccattgtattagtg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |
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| T |
43549165 |
caaaggaaaaattgaaaatgtgaatcatactaagaggaaacactatcatgagatgcacaaagaggcattactaaatgcaagaaacactattgtgttagtg |
43549066 |
T |
|
| Q |
111 |
gctgttttaattgccaccgtaacttttgctgctggtattagtccacctggtggtgtgtaccaagaaggaccaatgagaggcaaatcaatggttggtagaa |
210 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||| | |||||||| |||| || |
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| T |
43549065 |
gctgttttaattgctactgtaacttttgctgctggtattagtccacctggtggtgtgtaccaagaaggaccgaagaaaggtatatcaatggctggtgaaa |
43548966 |
T |
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| Q |
211 |
catcagcttttaaggtatttgcgattagcaataacatagccctcttcacctctttatctgtagttattgttcttgttagtatcgttccatttagaagaaa |
310 |
Q |
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|||||||||||||||||||||| || ||||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
43548965 |
catcagcttttaaggtatttgcaataagcaatatcatagcactctttacctctttatctgtggttattgttcttgttagtatcattccatttagaagaaa |
43548866 |
T |
|
| Q |
311 |
accacaaacattattgttgatcattgctcacaaggttatgtgggtagctgtggccttcatggcaactggctatgttgcagct |
392 |
Q |
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|||||||||| || | |||| |||||||||||||||||||||||| |||||||| || |||| |||||| |||||||||||| |
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| T |
43548865 |
accacaaacaatactattgaccattgctcacaaggttatgtgggttgctgtggcatttatgggaactggttatgttgcagct |
43548784 |
T |
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