View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10638_low_23 (Length: 250)

Name: NF10638_low_23
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10638_low_23
NF10638_low_23
[»] chr3 (9 HSPs)
chr3 (1-239)||(27547211-27547449)
chr3 (91-239)||(27543797-27543939)
chr3 (90-239)||(7873890-7874039)
chr3 (87-165)||(13100768-13100846)
chr3 (89-223)||(19647296-19647431)
chr3 (88-176)||(7870125-7870213)
chr3 (49-96)||(10937412-10937459)
chr3 (48-82)||(27544627-27544661)
chr3 (48-85)||(20463121-20463158)
[»] chr5 (7 HSPs)
chr5 (75-239)||(25214440-25214604)
chr5 (75-239)||(25278590-25278754)
chr5 (48-200)||(12026273-12026424)
chr5 (75-192)||(7823115-7823233)
chr5 (49-119)||(35105137-35105207)
chr5 (48-121)||(17964368-17964442)
chr5 (48-85)||(17935645-17935682)
[»] chr8 (2 HSPs)
chr8 (88-239)||(28350602-28350753)
chr8 (177-239)||(29185660-29185722)
[»] chr6 (1 HSPs)
chr6 (87-236)||(5913995-5914144)
[»] chr7 (4 HSPs)
chr7 (75-239)||(26451385-26451549)
chr7 (88-176)||(48143640-48143728)
chr7 (61-209)||(23818699-23818847)
chr7 (61-126)||(7578636-7578701)
[»] chr2 (3 HSPs)
chr2 (100-197)||(17830746-17830843)
chr2 (17-46)||(11312280-11312309)
chr2 (202-239)||(17319634-17319671)
[»] chr4 (2 HSPs)
chr4 (88-239)||(42342762-42342913)
chr4 (49-85)||(20679250-20679286)
[»] scaffold0505 (1 HSPs)
scaffold0505 (192-239)||(9223-9270)
[»] chr1 (2 HSPs)
chr1 (138-239)||(16168766-16168866)
chr1 (48-85)||(18188161-18188198)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 27547449 - 27547211
Alignment:
Q  1 tgattaatatcgtaacatattgtacaatatagaagagtagagaaaatgagataacaaaagagtatgttgtattacttctcaagtgcatctttacatcaaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27547449 tgattaatatcgtaacatattgtacaacatagaagagtagagaaaacgagataacaaaagagtatgttgtattacttctcaagtgcatctttacatcaaa 27547350  T
Q  101 acatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcattcactaatgggaattataagaatttg 200  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27547349 acatgagtcctatttataggataccaatcagcaggtaaatgatcacatgcaatcaaagagcactaacaattcattcactaatgggaattataagaatttg 27547250  T
Q  201 aaagatcaataatggacatccaccaactttattattcat 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27547249 aaagatcaataatggacatccaccaactttattattcat 27547211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 91 - 239
Target Start/End: Complemental strand, 27543939 - 27543797
Alignment:
Q  91 ttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcattcactaatgggaatta 190  Q
    ||||||||||||| |||||||||||||||||||||||| || | ||| |||||||||||||||||||  ||||||||||||||||||||      | |||    
T  27543939 ttacatcaaaacacgagtcctatttataggatacaaataagcatgtatatgatcacatgcaatcaaaatgcactaacaattcattcact------agtta 27543846  T
Q  191 taagaatttgaaagatcaataatggacatccaccaactttattattcat 239  Q
    |||||||||| ||||| || |||||||||||||||||||||||||||||    
T  27543845 taagaatttggaagataaaaaatggacatccaccaactttattattcat 27543797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 7873890 - 7874039
Alignment:
Q  90 tttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcatt-cactaatgggaat 188  Q
    ||||||| |||||||||||| |||||||| ||||||||| || | || |||| |||||| |||||||||||||||||||||||||| ||||| | ||| |    
T  7873890 tttacattaaaacatgagtcttatttataagatacaaataagcaagtgaatgttcacatacaatcaaagagcactaacaattcattccactattaggagt 7873989  T
Q  189 tataagaatttgaaagatcaataatggacatccaccaactttattattcat 239  Q
    ||| |||||||  |||||||| |||  |||||||||||  |||||||||||    
T  7873990 tat-agaatttagaagatcaaaaattaacatccaccaatattattattcat 7874039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 13100846 - 13100768
Alignment:
Q  87 atctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcacta 165  Q
    |||||||||||||||||||||||||||||||||||||||||| || | || ||||||||| | |||||||||| |||||    
T  13100846 atctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgatcacgtacaatcaaagaccacta 13100768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 19647431 - 19647296
Alignment:
Q  89 ctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcattcactaatgggaat 188  Q
    |||||||| | ||| ||||| ||||||||||||||||||| |||| || |||||||| ||| ||| ||| | |||||||||| |||||| |||||||| |    
T  19647431 ctttacattacaacttgagttctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagt 19647333  T
Q  189 tataagaatttgaaagatcaa--taatggacatccac 223  Q
    ||||||||  || ||||||||  | ||||||||||||    
T  19647332 tataagaacgtggaagatcaaggttatggacatccac 19647296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 7870125 - 7870213
Alignment:
Q  88 tctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcattc 176  Q
    ||||||||||||||||||| | |||||||||| |||||||| |  | ||||||  ||||||||||||||| ||| ||||||||||||||    
T  7870125 tctttacatcaaaacatgatttctatttatagaatacaaataaacaagtaaatattcacatgcaatcaaaaagcgctaacaattcattc 7870213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 10937459 - 10937412
Alignment:
Q  49 agataacaaaagagtatgttgtattacttctcaagtgcatctttacat 96  Q
    ||||||||||||||||||||||||| |||||||| ||  |||||||||    
T  10937459 agataacaaaagagtatgttgtattgcttctcaaatgtgtctttacat 10937412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 27544661 - 27544627
Alignment:
Q  48 gagataacaaaagagtatgttgtattacttctcaa 82  Q
    ||||||||||||||||||||| |||||||||||||    
T  27544661 gagataacaaaagagtatgttatattacttctcaa 27544627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 20463121 - 20463158
Alignment:
Q  48 gagataacaaaagagtatgttgtattacttctcaagtg 85  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  20463121 gagataacaaaagagtatgatgtattgcttctcaagtg 20463158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 25214440 - 25214604
Alignment:
Q  75 cttctcaagtgcatctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcat 174  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||| || | || |||| ||||||||||||||||||||||||||||||||    
T  25214440 cttcccaagtgtatctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcat 25214539  T
Q  175 t-cactaatgggaattataagaatttgaaagatcaataatggacatccaccaactttattattcat 239  Q
    | ||||||||||| |||| |||| ||| |||||||| ||||||||||||| |||||||||||||||    
T  25214540 tccactaatgggagttat-agaacttggaagatcaagaatggacatccactaactttattattcat 25214604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 25278590 - 25278754
Alignment:
Q  75 cttctcaagtgcatctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcat 174  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||| || | || |||| ||||||||||||||||||||||||||||||||    
T  25278590 cttcccaagtgtatctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcat 25278689  T
Q  175 t-cactaatgggaattataagaatttgaaagatcaataatggacatccaccaactttattattcat 239  Q
    | ||||||||||| |||| |||| ||| |||||||| ||||||||||||| |||||||||||||||    
T  25278690 tccactaatgggagttat-agaacttggaagatcaagaatggacatccactaactttattattcat 25278754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 12026273 - 12026424
Alignment:
Q  48 gagataacaaaagagtatgttgtattacttctcaagtgcatctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcaca 147  Q
    |||| ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| |||||| ||||||||||| || | || ||||||| ||    
T  12026273 gagagaacaaaagagtatgtcgtattacttctcaagtatatctttacatcaaaacatgagtcttatttagaggatacaaataagcaagtgaatgatc-ca 12026371  T
Q  148 tgcaatcaaagagcactaacaattcattcactaatgggaattataagaatttg 200  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  12026372 tgcaatcaaagagcactaacaattcattcactaatgagagttataagaatttg 12026424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 7823115 - 7823233
Alignment:
Q  75 cttctcaagtgcatctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcat 174  Q
    |||| ||||||  ||||||||||||||||| |||||||||||||||| |||||| || | || |||| ||||||||||||||||||||||||||||| ||    
T  7823115 cttcacaagtgtttctttacatcaaaacataagtcctatttataggacacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaatttat 7823214  T
Q  175 t-cactaatgggaattata 192  Q
    | ||||| ||||| |||||    
T  7823215 tccactagtgggagttata 7823233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 35105207 - 35105137
Alignment:
Q  49 agataacaaaagagtatgttgtattacttctcaagtgcatctttacatcaaaacatgagtcctatttatag 119  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||  |||| |||||||||||||||||    
T  35105207 agataacaaaagagtatgttgtattacttctcaagtatgtctttacactaaaatatgagtcctatttatag 35105137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 17964442 - 17964368
Alignment:
Q  48 gagataacaaaagagtatgttgtattacttctcaagtgcat-ctttacatcaaaacatgagtcctatttatagga 121  Q
    |||||||||||||||||||||||||| |||||||||||  | ||||||||| | | || |||| |||||||||||    
T  17964442 gagataacaaaagagtatgttgtattgcttctcaagtgtgtcctttacatcgagatataagtcatatttatagga 17964368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 17935682 - 17935645
Alignment:
Q  48 gagataacaaaagagtatgttgtattacttctcaagtg 85  Q
    |||||||||||||||||||||||||| |||||||||||    
T  17935682 gagataacaaaagagtatgttgtattgcttctcaagtg 17935645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 88 - 239
Target Start/End: Original strand, 28350602 - 28350753
Alignment:
Q  88 tctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcatt-cactaatggga 186  Q
    ||||||||||||||||||||||||||||||||||||||||| || | || |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28350602 tctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcattccactaatggga 28350701  T
Q  187 attataagaatttgaaagatcaataatggacatccaccaactttattattcat 239  Q
     |||| |||| ||| |||||||| ||||||||| ||| |||||||||||||||    
T  28350702 gttat-agaacttggaagatcaagaatggacattcactaactttattattcat 28350753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 29185660 - 29185722
Alignment:
Q  177 actaatgggaattataagaatttgaaagatcaataatggacatccaccaactttattattcat 239  Q
    ||||||||| |||||| |||  || |||||||| |||||||||||||||||||||||||||||    
T  29185660 actaatggggattataggaaggtggaagatcaagaatggacatccaccaactttattattcat 29185722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 5914144 - 5913995
Alignment:
Q  87 atctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcatt-cactaatggg 185  Q
    ||||||||||||||||||||||| |||||||| ||||||||| |  | || |||| ||| ||  |||||| |||||||||||||||||| ||||||||||    
T  5914144 atctttacatcaaaacatgagtcatatttatatgatacaaataaacaagtgaatgttcatatagaatcaatgagcactaacaattcattccactaatggg 5914045  T
Q  186 aattataagaatttgaaagatcaataatggacatccaccaactttattatt 236  Q
    | |||| |||| ||| ||||||||||||| ||||||| |||||||||||||    
T  5914044 agttat-agaacttggaagatcaataatgaacatccaacaactttattatt 5913995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 26451549 - 26451385
Alignment:
Q  75 cttctcaagtgcatctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcat 174  Q
    |||| |||||| ||||||| ||||   |||||||||||||||||||||||||||    |  | |||| ||| ||||||| |||||| |||||||||||||    
T  26451549 cttcacaagtgtatctttatatcatcgcatgagtcctatttataggatacaaatacacaaatgaatgttcatatgcaataaaagagtactaacaattcat 26451450  T
Q  175 tc-actaatgggaattataagaatttgaaagatcaataatggacatccaccaactttattattcat 239  Q
    || || ||||||| ||||| ||| |||||||||||| ||||||||| |||||||||||||||||||    
T  26451449 tccacaaatgggagttata-gaacttgaaagatcaaaaatggacattcaccaactttattattcat 26451385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 48143728 - 48143640
Alignment:
Q  88 tctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcattc 176  Q
    ||||||| ||||||||||||||||||||||||||||||||| || | || |||| |||| |||| ||||  ||||||||||||||||||    
T  48143728 tctttacctcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacgtgcattcaataagcactaacaattcattc 48143640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 209
Target Start/End: Original strand, 23818699 - 23818847
Alignment:
Q  61 agtatgttgtattacttctcaagtgcat-ctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaaga 159  Q
    ||||| |||| ||||||| ||||||  | |||||||| | ||| ||||||||||||||||||||||||| |||| || |||||||| ||  ||| ||| |    
T  23818699 agtatattgttttacttcacaagtgtgtactttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatttaattaaaca 23818797  T
Q  160 gcactaacaattcattcactaatgggaattataagaatttgaaagatcaa 209  Q
     |||||| ||| || |||||||||||| |||||||||| || ||||||||    
T  23818798 tcactaagaatccactcactaatgggagttataagaatatggaagatcaa 23818847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 7578701 - 7578636
Alignment:
Q  61 agtatgttgtattacttctcaagtgcatctttacatcaaaacatgagtcctatttataggatacaa 126  Q
    ||||||||||||| |||||||||||  |||||| |  | || ||||||||||||||||||||||||    
T  7578701 agtatgttgtattgcttctcaagtgtgtctttatactataatatgagtcctatttataggatacaa 7578636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 17830746 - 17830843
Alignment:
Q  100 aacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcattcactaatgggaattataagaat 197  Q
    |||||| |||||||||||| ||||||||| || | || || ||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  17830746 aacatgggtcctatttatatgatacaaataagcaagtgaaagatcacatgtaatcaaagagcactaacaattcattcactaattggagttataagaat 17830843  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 11312309 - 11312280
Alignment:
Q  17 atattgtacaatatagaagagtagagaaaa 46  Q
    ||||||||||||||||||||||||||||||    
T  11312309 atattgtacaatatagaagagtagagaaaa 11312280  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 17319634 - 17319671
Alignment:
Q  202 aagatcaataatggacatccaccaactttattattcat 239  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  17319634 aagatcaagaatggacatccaccaacattattattcat 17319671  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 42342913 - 42342762
Alignment:
Q  88 tctttacatcaaaacatgagtcctatttataggatacaaatcagtaggtaaatgatcacatgcaatcaaagagcactaacaattcattcactaatgggaa 187  Q
    ||||||||| ||| ||||| || |||||||  ||||||||| |||| ||||||||| | ||  | | |||||  |||||||||| ||||||||||   |     
T  42342913 tctttacattaaatcatgactcgtatttatgtgatacaaataagtaagtaaatgataaaatatacttaaagacaactaacaatttattcactaattaaag 42342814  T
Q  188 ttataagaatttgaaagatcaataatggacatccaccaactttattattcat 239  Q
    |||||||||| ||||| |||||   | |||||||||||||||||| ||||||    
T  42342813 ttataagaatgtgaaaaatcaaaggtagacatccaccaactttatcattcat 42342762  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 20679250 - 20679286
Alignment:
Q  49 agataacaaaagagtatgttgtattacttctcaagtg 85  Q
    ||||||||||||||||| || ||||||||||||||||    
T  20679250 agataacaaaagagtatattatattacttctcaagtg 20679286  T

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Target: scaffold0505 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 9270 - 9223
Alignment:
Q  192 aagaatttgaaagatcaataatggacatccaccaactttattattcat 239  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||||||    
T  9270 aagaatttggaagatcaagaatggacatccaccaacattattattcat 9223  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 16168866 - 16168766
Alignment:
Q  138 aatgatcacatgcaatcaaagagcactaacaattcattcactaatgggaattataagaatttgaaagatcaataatggacatccaccaactttattattc 237  Q
    ||||||||||| |  ||||||| |||||||||||  ||||||||   || ||||||||||||| || ||||| ||| ||||| ||||||| |||||||||    
T  16168866 aatgatcacattcggtcaaagaccactaacaattt-ttcactaactagagttataagaatttggaaaatcaagaatagacattcaccaacattattattc 16168768  T
Q  238 at 239  Q
    ||    
T  16168767 at 16168766  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 18188161 - 18188198
Alignment:
Q  48 gagataacaaaagagtatgttgtattacttctcaagtg 85  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  18188161 gagataacaaaagagtatgttatattacttctcaagtg 18188198  T

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