View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_26 (Length: 242)
Name: NF10638_low_26
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_26 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 27547686 - 27547462
Alignment:
| Q |
18 |
aaaaggtatttgaatcgcgtcgatcatgattgaaaatagtgatgaatacaaaatttaaagaaacgaatacaatatgttaatacaaaattaggtgttagtt |
117 |
Q |
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| T |
27547686 |
aaaagatatttgaatcgcgtcgatcatgattgaaaatagtgatgaatacaaaatttaaagaaacgaatacaatatgttaatacaaaattaggtgttagtt |
27547587 |
T |
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| Q |
118 |
tcgtgttttacttatgttaataaatgatgaaacatttagaaatcaaaaacgatgattaatgagtcgaaacgtagagatcattttgaagttaaatttgaaa |
217 |
Q |
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| T |
27547586 |
tcgggttttacttatgttaataaatgatgaaacatttagaaatcaaaaacgatgattaatgagtcgaaacgtggagatcattttgaagttaaatttgaat |
27547487 |
T |
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| Q |
218 |
cattagaaatagacaaaaattacat |
242 |
Q |
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| T |
27547486 |
cattggaaatagacaaaaattacat |
27547462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 27543793 - 27543670
Alignment:
| Q |
114 |
agtttcgtgttttacttatgttaataaatgatgaaacatttagaaatcaaaaacgatga-ttaatgagtcgaaacgtagagatcattttgaagttaaatt |
212 |
Q |
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| T |
27543793 |
agtttcgggttttacttatgttaataaatgatgaaacatttagaaagcaaaaacgatgagattatgagttgaaaaatagagatcattttgaagttaaact |
27543694 |
T |
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| Q |
213 |
tgaaacattagaaa-tagacaaaa |
235 |
Q |
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| T |
27543693 |
tgaatcattggaaagtagacaaaa |
27543670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 27529944 - 27529816
Alignment:
| Q |
113 |
tagtttcgtgttttacttatgttaataaatgatgaaacatttagaaatcaaaaacgat--gattaatgagtcgaaa---cgtagagatcattttgaagtt |
207 |
Q |
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| T |
27529944 |
tagtttcggattttacttatgttaataaatgatgaaacattgagaaagcaattatgatgagattcatgagttgaaaagtagtagagatcattttgaagtt |
27529845 |
T |
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| Q |
208 |
aaatttgaaacattagaaa-tagacaaaa |
235 |
Q |
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| T |
27529844 |
aaacttaaatcattggaaagtagacaaaa |
27529816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 27530004 - 27529947
Alignment:
| Q |
35 |
cgtcgatcatgattgaaaatagtgatgaatacaaaatttaaagaaacgaatacaatat |
92 |
Q |
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| T |
27530004 |
cgtcgatcatgattgaatatggtgatgtatgcaaaatttaaagaaaaaaatacaatat |
27529947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 27536102 - 27536034
Alignment:
| Q |
18 |
aaaaggtatttgaatcgc-----gtcgatcatgattgaaaatagtgatgaatacaaaatttaaagaaac |
81 |
Q |
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| T |
27536102 |
aaaaggtatttgaatcgcaaatcgttgatcatgattgaatatggtgatgtatacaaaatttaaagaaac |
27536034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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