View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_28 (Length: 240)
Name: NF10638_low_28
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33512041 - 33512263
Alignment:
| Q |
1 |
ttgtgaaaattgcggcaaaaaaccacgacaacgcaaaagctccattttttagcttctagaaatcacggaaactttgcaataaaaaatccttaatattatt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33512041 |
ttgtgaaaattgcggcaaaaaaccacaacaacgcaaaagctccattttttagcttctagaaatcacggaaactttgcaataaaaaatccttaatattatt |
33512140 |
T |
|
| Q |
101 |
ttgaactttataaacaacaaaggaacnnnnnnntcttaaaaataaacggaatttataacataggaatatctcttattttcttgaggcctagaactttgac |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33512141 |
ttgaactttataaacaacaaaggaacaaaaaaatcttaaaaataaacggaatttataacataggaatatctcttattttcttgaggcctcgaactttgac |
33512240 |
T |
|
| Q |
201 |
ttaccattttaaaaactacttga |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
33512241 |
ttaccattttaaaaactacttga |
33512263 |
T |
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