View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10638_low_3 (Length: 388)

Name: NF10638_low_3
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10638_low_3
NF10638_low_3
[»] chr4 (22 HSPs)
chr4 (235-332)||(46993303-46993400)
chr4 (232-306)||(54316060-54316134)
chr4 (232-302)||(9551456-9551526)
chr4 (232-302)||(7061972-7062042)
chr4 (232-302)||(17914979-17915049)
chr4 (237-302)||(3556366-3556431)
chr4 (232-302)||(50544256-50544326)
chr4 (237-302)||(8538363-8538428)
chr4 (243-303)||(35256141-35256201)
chr4 (242-297)||(32591166-32591221)
chr4 (240-302)||(11789859-11789921)
chr4 (232-297)||(23655299-23655364)
chr4 (240-297)||(46993072-46993129)
chr4 (240-296)||(50551491-50551547)
chr4 (238-289)||(42475889-42475940)
chr4 (232-297)||(5465858-5465923)
chr4 (237-274)||(19037750-19037787)
chr4 (243-287)||(21785940-21785984)
chr4 (237-304)||(24673957-24674024)
chr4 (237-274)||(4404084-4404122)
chr4 (237-302)||(30379315-30379380)
chr4 (345-373)||(46993399-46993427)
[»] chr5 (11 HSPs)
chr5 (232-303)||(31193964-31194035)
chr5 (232-302)||(31194196-31194266)
chr5 (232-304)||(17370065-17370137)
chr5 (237-302)||(36955303-36955368)
chr5 (237-293)||(32347133-32347189)
chr5 (232-302)||(8754658-8754728)
chr5 (232-302)||(14076900-14076970)
chr5 (232-296)||(36955525-36955589)
chr5 (240-296)||(9862231-9862287)
chr5 (237-272)||(42546585-42546620)
chr5 (232-266)||(42546385-42546419)
[»] chr7 (12 HSPs)
chr7 (237-304)||(19318455-19318522)
chr7 (232-303)||(19318379-19318450)
chr7 (232-302)||(35207178-35207248)
chr7 (232-302)||(35207406-35207476)
chr7 (237-302)||(25048260-25048325)
chr7 (237-294)||(39983873-39983930)
chr7 (232-306)||(35363314-35363388)
chr7 (232-296)||(2834430-2834494)
chr7 (237-296)||(19318153-19318212)
chr7 (256-302)||(6408253-6408299)
chr7 (237-296)||(29474648-29474707)
chr7 (232-301)||(6408485-6408555)
[»] chr2 (15 HSPs)
chr2 (232-303)||(22563209-22563280)
chr2 (232-302)||(4371454-4371524)
chr2 (232-296)||(21265569-21265633)
chr2 (237-304)||(29893033-29893100)
chr2 (232-302)||(22563441-22563511)
chr2 (232-302)||(17200078-17200148)
chr2 (232-293)||(12232572-12232633)
chr2 (232-305)||(20296647-20296720)
chr2 (232-288)||(17200309-17200364)
chr2 (232-304)||(21265793-21265865)
chr2 (232-294)||(20296270-20296332)
chr2 (232-302)||(34645547-34645617)
chr2 (236-278)||(156972-157014)
chr2 (237-297)||(4682761-4682821)
chr2 (250-290)||(33491417-33491457)
[»] chr1 (16 HSPs)
chr1 (232-303)||(34622556-34622627)
chr1 (238-302)||(24882971-24883035)
chr1 (240-302)||(24883207-24883269)
chr1 (240-302)||(3385550-3385612)
chr1 (232-297)||(27171804-27171869)
chr1 (232-297)||(33400860-33400925)
chr1 (232-294)||(33156685-33156747)
chr1 (237-295)||(49777059-49777117)
chr1 (237-302)||(49776819-49776884)
chr1 (256-295)||(5771915-5771954)
chr1 (237-302)||(33156456-33156520)
chr1 (237-297)||(34969990-34970050)
chr1 (237-293)||(37948797-37948853)
chr1 (237-274)||(5772121-5772158)
chr1 (232-293)||(33401087-33401148)
chr1 (265-297)||(13946936-13946968)
[»] chr3 (12 HSPs)
chr3 (232-293)||(43797361-43797422)
chr3 (232-301)||(53197214-53197283)
chr3 (232-303)||(8799316-8799387)
chr3 (232-302)||(38499819-38499889)
chr3 (232-297)||(4041414-4041479)
chr3 (237-302)||(38500057-38500122)
chr3 (237-295)||(43797588-43797646)
chr3 (237-296)||(25349946-25350005)
chr3 (232-274)||(46883643-46883685)
chr3 (232-274)||(8657427-8657469)
chr3 (232-274)||(8799547-8799589)
chr3 (232-302)||(53196988-53197058)
[»] chr8 (14 HSPs)
chr8 (232-304)||(15009089-15009161)
chr8 (232-295)||(6911036-6911099)
chr8 (232-302)||(14999171-14999241)
chr8 (240-303)||(43801710-43801773)
chr8 (237-303)||(16324843-16324909)
chr8 (232-306)||(8489369-8489443)
chr8 (232-304)||(43801468-43801540)
chr8 (237-296)||(41403996-41404055)
chr8 (232-273)||(6911260-6911301)
chr8 (237-294)||(16325082-16325139)
chr8 (246-303)||(41721827-41721884)
chr8 (256-303)||(6911293-6911340)
chr8 (265-302)||(31547580-31547617)
chr8 (256-297)||(41403764-41403805)
[»] chr6 (5 HSPs)
chr6 (232-302)||(22748588-22748658)
chr6 (237-295)||(22748824-22748882)
chr6 (232-302)||(16125522-16125592)
chr6 (240-306)||(16125761-16125827)
chr6 (240-295)||(11014560-11014615)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 46993303 - 46993400
Alignment:
Q  235 aaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcatttgcatgacactaatgagaaaaagtaaa 332  Q
    |||| |||||||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46993303 aaatatcttgcattcaaatcttaaatggagtaaattgagcttagtttaaatggagcatacccggactcatttgcatgacactaatgagaaaaagtaaa 46993400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 54316060 - 54316134
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcattt 306  Q
    |||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  54316060 gccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacccggactcattt 54316134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 9551456 - 9551526
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  9551456 gccaaatgtcttccatccaagccctaaatggagtaaatggagtttagtctaaatggagcatacccgaactc 9551526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 7062042 - 7061972
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||| ||||    
T  7062042 gccacatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaatggagcatacccgaactc 7061972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 17914979 - 17915049
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| ||| ||||    
T  17914979 gccacatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaatggagcatatccgaactc 17915049  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 3556431 - 3556366
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||||||||||||||||||||||||||||||||| || ||||  |||||||||||| |||||||||    
T  3556431 atgtcttgcatccaaaccttaaatggagtaaatgaagtttagcttaaatggagcatgcccggactc 3556366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 50544326 - 50544256
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||||||| ||||| || |||||||||||||| |||||||||||||| ||| ||||    
T  50544326 gccacatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaatggagcatatccgaactc 50544256  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 8538363 - 8538428
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||||||||||||||||| |||||||| ||||||||||| |  |||||||||||||||| ||||||    
T  8538363 atgtcttgcatccaaaccctaaatggactaaatggagctaatactaaatggagcatacctggactc 8538428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 35256201 - 35256141
Alignment:
Q  243 tgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactca 303  Q
    |||||||||||  ||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  35256201 tgcatccaaactctaaatggagtaaatgcagcttagtctaaatagagcatacccgaactca 35256141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 32591221 - 32591166
Alignment:
Q  242 ttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccg 297  Q
    |||||| |||||||||||||||||||||||||||||  |||||| |||||||||||    
T  32591221 ttgcatacaaaccttaaatggagtaaatggagcttaacctaaatagagcatacccg 32591166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 11789921 - 11789859
Alignment:
Q  240 tcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    ||||||||| ||||| ||||||||||||||| ||||| | |||||||||||||||||| ||||    
T  11789921 tcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagcatacccgaactc 11789859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 23655299 - 23655364
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccg 297  Q
    |||| |||||||||||| ||||| |||||||| |||||| ||||||  ||||||||||||||||||    
T  23655299 gccacatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccg 23655364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 46993129 - 46993072
Alignment:
Q  240 tcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccg 297  Q
    ||||||||||||||| ||||| || |||||||||||||  ||||||||||||||||||    
T  46993129 tcttgcatccaaaccctaaatagaataaatggagcttaacctaaatggagcatacccg 46993072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 50551491 - 50551547
Alignment:
Q  240 tcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcataccc 296  Q
    |||| |||||||||||||||||||||||||  || |||| |||||||||||||||||    
T  50551491 tcttacatccaaaccttaaatggagtaaataaagtttagcctaaatggagcataccc 50551547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 42475940 - 42475889
Alignment:
Q  238 tgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggag 289  Q
    ||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||    
T  42475940 tgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaatggag 42475889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 5465923 - 5465858
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccg 297  Q
    |||| ||||||| |||| ||||| |||||| |||||||| | ||||| ||||||||||||||||||    
T  5465923 gccacatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaatggagcatacccg 5465858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 19037787 - 19037750
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagc 274  Q
    |||||||||||||||| |||||||||||||||||||||    
T  19037787 atgtcttgcatccaaatcttaaatggagtaaatggagc 19037750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 21785940 - 21785984
Alignment:
Q  243 tgcatccaaaccttaaatggagtaaatggagcttagtctaaatgg 287  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||    
T  21785940 tgcatccaaactctaaatggagtaaatggagcttagcctaaatgg 21785984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 24673957 - 24674024
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcat 304  Q
    ||||||| |||||||||  ||||| ||||||||| || |||| |||||||||||||| ||| ||||||    
T  24673957 atgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaatggagcatatccgaactcat 24674024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 4404084 - 4404122
Alignment:
Q  237 atgtcttgcatccaaacc-ttaaatggagtaaatggagc 274  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  4404084 atgtcttgcatccaaacccttaaatggagtaaatggagc 4404122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 30379380 - 30379315
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    ||||||||||||||| |||||||| || |||||  |||| |   ||||||||||||||||||||||    
T  30379380 atgtcttgcatccaagccttaaatagactaaataaagctaatagtaaatggagcatacccggactc 30379315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 373
Target Start/End: Original strand, 46993399 - 46993427
Alignment:
Q  345 aagtgaattataatgttgtttatgataac 373  Q
    |||||||||||||||||||||||||||||    
T  46993399 aagtgaattataatgttgtttatgataac 46993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 31194035 - 31193964
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactca 303  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  31194035 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactca 31193964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 31194196 - 31194266
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  31194196 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 31194266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 17370137 - 17370065
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcat 304  Q
    |||| |||||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||| ||||||    
T  17370137 gccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagcatacccgaactcat 17370065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 36955368 - 36955303
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||| ||||    
T  36955368 atgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcctacccgaactc 36955303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 32347133 - 32347189
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcata 293  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  32347133 atgtcttacatccaaaccttaaatggagtaattggagcttagcctaaatggagcata 32347189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 8754728 - 8754658
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| ||||||| |||||||||| ||||| |||||||||||| ||||||||||||||| ||||||| ||||    
T  8754728 gccacatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaatggaggatacccgaactc 8754658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 14076900 - 14076970
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||||||| |||||||||||||| || ||||| |||||||||||||| ||| ||||    
T  14076900 gccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatggagcatatccgaactc 14076970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 36955525 - 36955589
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcataccc 296  Q
    |||| |||||||||| ||||||| ||||| |||||||| |||||||| ||||||||||| |||||    
T  36955525 gccacatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatggagcgtaccc 36955589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 9862231 - 9862287
Alignment:
Q  240 tcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcataccc 296  Q
    ||||||||||||||| ||||||||||||| | | ||||  |||||||||||||||||    
T  9862231 tcttgcatccaaaccctaaatggagtaaacgaaacttaccctaaatggagcataccc 9862287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 42546585 - 42546620
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatgga 272  Q
    |||||||||||||||||| |||||||||||||||||    
T  42546585 atgtcttgcatccaaaccctaaatggagtaaatgga 42546620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 42546419 - 42546385
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagta 266  Q
    ||||||||||||||||||||||| |||||||||||    
T  42546419 gccaaatgtcttgcatccaaaccctaaatggagta 42546385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 19318455 - 19318522
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcat 304  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  19318455 atgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactcat 19318522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 19318379 - 19318450
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactca 303  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  19318379 gccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccgaactca 19318450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 35207248 - 35207178
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||  ||||||| ||||    
T  35207248 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaatatacccgaactc 35207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 35207406 - 35207476
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||| ||||    
T  35207406 gccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatggagcatatccgaactc 35207476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 25048260 - 25048325
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||| ||||    
T  25048260 atgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaatggagcatacccgaactc 25048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 39983873 - 39983930
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatac 294  Q
    |||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||    
T  39983873 atgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagcatac 39983930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 35363388 - 35363314
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcattt 306  Q
    |||| |||| ||||||| ||||  ||||||||||||||| | ||||| |||||||||||||||||| ||||||||    
T  35363388 gccacatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaatggagcatacccgaactcattt 35363314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 2834430 - 2834494
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcataccc 296  Q
    |||| |||| ||| ||||||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  2834430 gccacatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatggagcataccc 2834494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 19318212 - 19318153
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcataccc 296  Q
    ||||||| |||||||||  |||||||||||||||| |||||  |||||||||||||||||    
T  19318212 atgtcttacatccaaactctaaatggagtaaatggcgcttaacctaaatggagcataccc 19318153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 6408299 - 6408253
Alignment:
Q  256 taaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||||    
T  6408299 taaatgaagtaaatggagcttagactaaatggagcatactcggactc 6408253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 29474648 - 29474707
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcataccc 296  Q
    ||||||||||||||| |  ||||| |||||||||||| |||| |||||||||||| ||||    
T  29474648 atgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaatggagcacaccc 29474707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 6408485 - 6408555
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatgga-gcttagtctaaatggagcatacccggact 301  Q
    |||| |||||||||||||||||| |||||| ||||||  || | |||  ||||||||||||||||||||||    
T  6408485 gccacatgtcttgcatccaaaccctaaatgaagtaaaaagaagtttaacctaaatggagcatacccggact 6408555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 22563280 - 22563209
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactca 303  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||    
T  22563280 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactca 22563209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 4371524 - 4371454
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  4371524 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 4371454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 21265633 - 21265569
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcataccc 296  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21265633 gccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaatggagcataccc 21265569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 29893033 - 29893100
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcat 304  Q
    |||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||| ||||||    
T  29893033 atgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaatggagcatacccgaactcat 29893100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 22563441 - 22563511
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||| ||||    
T  22563441 gccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagcatacccgaactc 22563511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 17200148 - 17200078
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| ||||||| |||||||| | ||||||||||||||||||||| | |||||||||||||||||| ||||    
T  17200148 gccacatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagcatacccgaactc 17200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 12232633 - 12232572
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcata 293  Q
    |||| ||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  12232633 gccacatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaatggagcata 12232572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 20296647 - 20296720
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcatt 305  Q
    |||| ||||||| |||||||  ||||||||||||||||||||||||| |||||| ||||||||||  |||||||    
T  20296647 gccacatgtcttacatccaattcttaaatggagtaaatggagcttagcctaaatagagcatacccaaactcatt 20296720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 17200309 - 17200364
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatgga 288  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  17200309 gccacatgtcttacatccaaaccttaaatggagtaaatggagcttag-ctaaatgga 17200364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 21265793 - 21265865
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcat 304  Q
    |||| |||||||||||||||||| ||||| |||||||||||||||||  ||||| |||||||| || ||||||    
T  21265793 gccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagcatactcgaactcat 21265865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 20296332 - 20296270
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatac 294  Q
    |||| ||||||| |||||||||| |||||| |||||||||| ||||| | |||||||||||||    
T  20296332 gccatatgtctttcatccaaaccctaaatgaagtaaatggatcttagccaaaatggagcatac 20296270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 34645617 - 34645547
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||| ||| |||||||||||||| || ||||  |||||| ||||||||||| ||||    
T  34645617 gccacatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagcatacccgaactc 34645547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 157014 - 156972
Alignment:
Q  236 aatgtcttgcatccaaaccttaaatggagtaaatggagcttag 278  Q
    |||||||| |||||||| | |||||||||||||||||||||||    
T  157014 aatgtcttacatccaaatcctaaatggagtaaatggagcttag 156972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 4682821 - 4682761
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccg 297  Q
    |||||||||||| ||||  ||||||||||||||| ||||||   |||||||| ||||||||    
T  4682821 atgtcttgcatctaaactctaaatggagtaaatgaagcttaaattaaatggaacatacccg 4682761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 33491417 - 33491457
Alignment:
Q  250 aaaccttaaatggagtaaatggagcttagtctaaatggagc 290  Q
    ||||| ||||| ||||||||||||||||| |||||||||||    
T  33491417 aaaccctaaatagagtaaatggagcttagcctaaatggagc 33491457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 34622556 - 34622627
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactca 303  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  34622556 gccacatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaatggagcatacccgaactca 34622627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 24883035 - 24882971
Alignment:
Q  238 tgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    ||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||||    
T  24883035 tgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccgaactc 24882971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 24883207 - 24883269
Alignment:
Q  240 tcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  24883207 tcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaacatacccgaactc 24883269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 3385550 - 3385612
Alignment:
Q  240 tcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||||    
T  3385550 tcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatacccgaactc 3385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 27171869 - 27171804
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccg 297  Q
    |||| ||||||| |||||||||| ||||||||||||||| ||||||| ||||||| ||||||||||    
T  27171869 gccacatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaatgaagcatacccg 27171804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 33400925 - 33400860
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccg 297  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  33400925 gccacatgccttacatccaaaccttaaatggagtaaatggagcttagcttaaatggagcatgcccg 33400860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 33156685 - 33156747
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatac 294  Q
    |||| |||||||| ||||||||| ||||||||||||||  ||||||| |||||||||||||||    
T  33156685 gccacatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatggagcatac 33156747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 49777059 - 49777117
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacc 295  Q
    |||||||||||||||||| ||||| || ||||||||| |||| ||||||||||||||||    
T  49777059 atgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaatggagcatacc 49777117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 49776884 - 49776819
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||||||||||||||| | ||||||||||||||  |||||||  ||||||||||||||||| ||||    
T  49776884 atgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacccgaactc 49776819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 5771954 - 5771915
Alignment:
Q  256 taaatggagtaaatggagcttagtctaaatggagcatacc 295  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  5771954 taaatggagtaaatgaagcttagtctaaatggagcatacc 5771915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 33156520 - 33156456
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    ||||||| |||||||||  ||||||||||||||||||| ||| || ||||||||||||||| ||||    
T  33156520 atgtcttacatccaaactctaaatggagtaaatggagcctagcct-aatggagcatacccgaactc 33156456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 34970050 - 34969990
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccg 297  Q
    |||||||||||||||| | ||||| |||||||||||| |||  ||||||| ||||||||||    
T  34970050 atgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaatgaagcatacccg 34969990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 37948853 - 37948797
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcata 293  Q
    ||||||| |||||||||||||||| ||||||||| ||||||   |||||||||||||    
T  37948853 atgtcttacatccaaaccttaaattgagtaaatgaagcttaacttaaatggagcata 37948797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 5772121 - 5772158
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagc 274  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  5772121 atgtcttgcatccaaaccttaaatagagtagatggagc 5772158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 33401087 - 33401148
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcata 293  Q
    |||| ||||||| |||| |||||||||||  ||||||| |||||||| ||||||| ||||||    
T  33401087 gccacatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaatgtagcata 33401148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 13946968 - 13946936
Alignment:
Q  265 taaatggagcttagtctaaatggagcatacccg 297  Q
    |||||||||||||| ||||||||||||||||||    
T  13946968 taaatggagcttagcctaaatggagcatacccg 13946936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 43797422 - 43797361
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcata 293  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43797422 gccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcata 43797361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 53197214 - 53197283
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggact 301  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||    
T  53197214 gccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccggact 53197283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 8799387 - 8799316
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactca 303  Q
    |||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| |||||    
T  8799387 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagcatacccgaactca 8799316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 38499889 - 38499819
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  38499889 gccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 4041414 - 4041479
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccg 297  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||    
T  4041414 gccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccg 4041479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 38500057 - 38500122
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    ||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  38500057 atgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggagcatacccgaactc 38500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 43797588 - 43797646
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacc 295  Q
    ||||||| |||||||||| ||||| ||||||||||| ||||| ||||||||||||||||    
T  43797588 atgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatggagcatacc 43797646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 25349946 - 25350005
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcataccc 296  Q
    ||||||| |||||||||| ||||| || ||||||||||||| | ||||||||||||||||    
T  25349946 atgtcttacatccaaaccctaaatagaataaatggagcttaatttaaatggagcataccc 25350005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 46883643 - 46883685
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagc 274  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  46883643 gccacatgtcttgcatccaaaccctaaatggagtaaatggagc 46883685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 8657469 - 8657427
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagc 274  Q
    |||| ||||||||||| |||||| |||||||||||||||||||    
T  8657469 gccacatgtcttgcattcaaaccctaaatggagtaaatggagc 8657427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 8799547 - 8799589
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagc 274  Q
    |||| |||||||||||| ||||| |||||||||||||||||||    
T  8799547 gccacatgtcttgcatctaaaccctaaatggagtaaatggagc 8799589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 53197058 - 53196988
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||| ||||||||||||| ||||| ||||||||| || ||||  ||||||| ||||||||| ||||    
T  53197058 gccacatgttttgcatccaaaccctaaatagagtaaatgaagtttagcttaaatggggcatacccgaactc 53196988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 232 - 304
Target Start/End: Original strand, 15009089 - 15009161
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcat 304  Q
    |||| ||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||    
T  15009089 gccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaactcat 15009161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 6911099 - 6911036
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacc 295  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  6911099 gccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacc 6911036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 14999241 - 14999171
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||| ||||    
T  14999241 gccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagcatatccgaactc 14999171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 43801710 - 43801773
Alignment:
Q  240 tcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactca 303  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||| |||||||| |||||    
T  43801710 tcttgcatccaaactctaaatggagtaaatggagcttagcctaaatggaacatacccgaactca 43801773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 16324909 - 16324843
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactca 303  Q
    |||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||| |||| |||||    
T  16324909 atgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaatggagcatgcccgaactca 16324843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 8489443 - 8489369
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcattt 306  Q
    |||| ||||||| |||||||||| |||||||| |||||| ||||||  |||||||||||||||||  ||||||||    
T  8489443 gccacatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccaaactcattt 8489369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 43801540 - 43801468
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcat 304  Q
    |||| ||||||| |||||||||  ||||||||||||||| || |||| ||||||| |||||||||| ||||||    
T  43801540 gccacatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaatgaagcatacccgaactcat 43801468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 41403996 - 41404055
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcataccc 296  Q
    |||||||||||||||||| ||||| |||||||| || ||||  |||||||||||||||||    
T  41403996 atgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcataccc 41404055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 6911260 - 6911301
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggag 273  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  6911260 gccacatgtcttgcatccaaaccctaaatggagtaaatggag 6911301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 16325082 - 16325139
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatac 294  Q
    |||||||||||||||||| |||||||||||||||||| || |  |||||| |||||||    
T  16325082 atgtcttgcatccaaaccctaaatggagtaaatggagtttggcttaaatgaagcatac 16325139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 41721884 - 41721827
Alignment:
Q  246 atccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactca 303  Q
    ||||||| |||||||| ||||||||||||||| ||||||| ||||||| ||| |||||    
T  41721884 atccaaatcttaaatgaagtaaatggagcttaatctaaatcgagcatatccgaactca 41721827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 6911293 - 6911340
Alignment:
Q  256 taaatggagtaaatggagcttagtctaaatggagcatacccggactca 303  Q
    ||||||||||||||||||||||| |||||| |||| |||||| |||||    
T  6911293 taaatggagtaaatggagcttagcctaaattgagcgtacccgaactca 6911340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 31547617 - 31547580
Alignment:
Q  265 taaatggagcttagtctaaatggagcatacccggactc 302  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  31547617 taaatggagcttagtctaaatggagcatatccgaactc 31547580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 41403805 - 41403764
Alignment:
Q  256 taaatggagtaaatggagcttagtctaaatggagcatacccg 297  Q
    |||||||||||||| ||||||| |||||||| ||||||||||    
T  41403805 taaatggagtaaattgagcttaatctaaatgaagcatacccg 41403764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 22748658 - 22748588
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||| ||||    
T  22748658 gccacatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaattgagcatacccgaactc 22748588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 22748824 - 22748882
Alignment:
Q  237 atgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacc 295  Q
    ||||||| |||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  22748824 atgtctttcatccaaatcctaaatggagtaaatggatcttagtctaaatggagcatacc 22748882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 16125592 - 16125522
Alignment:
Q  232 gccaaatgtcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactc 302  Q
    |||| |||||||||||||||||| |||||| | |||||| || |||| |||||||||||||||||| ||||    
T  16125592 gccacatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaatggagcatacccgaactc 16125522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 16125761 - 16125827
Alignment:
Q  240 tcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacccggactcattt 306  Q
    |||||||||||| |  ||||| |||||||||||||||||||||||| ||||||| ||| ||||||||    
T  16125761 tcttgcatccaagctctaaattgagtaaatggagcttagtctaaatagagcatatccgaactcattt 16125827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 11014560 - 11014615
Alignment:
Q  240 tcttgcatccaaaccttaaatggagtaaatggagcttagtctaaatggagcatacc 295  Q
    |||||||| ||||| |||||| || ||||||||| |||| ||||||||||||||||    
T  11014560 tcttgcattcaaacattaaatagaataaatggagtttagcctaaatggagcatacc 11014615  T

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