View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_32 (Length: 227)
Name: NF10638_low_32
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_32 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30889227 - 30889001
Alignment:
| Q |
1 |
ttgagcaagcctcttatatcaggtggtgctatctcagatatgtagagaggagttagactgatggctaatgcaattgcaattccattcaatagccttgaaa |
100 |
Q |
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| T |
30889227 |
ttgagcaagcctcttatatcaggtggtgctatctcagatatgtagagaggagttagactgatggctaatgcaattgcaattccattcaatagccttgaaa |
30889128 |
T |
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| Q |
101 |
acagtacaacaggaacatttggagcccataacataactaaaccacttaagaaaaacatgattgaggatgttattaacatcggacgccttccgaacatatc |
200 |
Q |
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| T |
30889127 |
acagtacaacaggaacatttggagcccataacataactaaaccacttaagaaaaacatgattgaggatgttattaacatcggacgccttccgaacatatc |
30889028 |
T |
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| Q |
201 |
tgaaactgtgccggagaatattgttac |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
30889027 |
tgaaactgtgccggagaatattgttac |
30889001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 9953177 - 9953218
Alignment:
| Q |
10 |
cctcttatatcaggtggtgctatctcagatatgtagagagga |
51 |
Q |
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| T |
9953177 |
cctcttatatcaggtggtgctatctcagatatgtaaagagga |
9953218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 19696005 - 19696046
Alignment:
| Q |
10 |
cctcttatatcaggtggtgctatctcagatatgtagagagga |
51 |
Q |
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| T |
19696005 |
cctcttatatcaggtggtgctatctcagatatgtaaagagga |
19696046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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