View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10638_low_34 (Length: 223)

Name: NF10638_low_34
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10638_low_34
NF10638_low_34
[»] chr1 (2 HSPs)
chr1 (13-206)||(15170705-15170898)
chr1 (32-92)||(15169930-15169991)
[»] scaffold1031 (3 HSPs)
scaffold1031 (13-206)||(60-252)
scaffold1031 (18-105)||(1795-1882)
scaffold1031 (13-48)||(3254-3289)
[»] scaffold1037 (3 HSPs)
scaffold1037 (72-206)||(1-134)
scaffold1037 (13-134)||(3135-3256)
scaffold1037 (18-105)||(1677-1764)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 15170705 - 15170898
Alignment:
Q  13 cagagacactagccactattctttccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcatttta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15170705 cagaaacactagccactattctttccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcatttta 15170804  T
Q  113 acacctagaaatctaacaaaaaagtgtatattagagactacatgcatgagaacccagcactttttagcatcttgtgtgtgagtgaataacaaac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15170805 acacctagaaatctaacaaaaaagtgtatattagagactacatgcatgagaacccagcactttttagcatcttgtgtgtgagtgaataacaaac 15170898  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 15169930 - 15169991
Alignment:
Q  32 tctttccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactaca-aacaaaat 92  Q
    ||||||||||||||||||||||||  ||||| |||||||||||| |||| ||| ||||||||    
T  15169930 tctttccatttacaaaagtgaacacctgtgtttgtcccttacaataaacaacataacaaaat 15169991  T

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Target: scaffold1031 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 60 - 252
Alignment:
Q  13 cagagacactagccactattctttccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcatttta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  60 cagaaacactagccactattctttccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcatttta 159  T
Q  113 acacctagaaatctaacaaaaaagtgtatattagagactacatgcatgagaacccagcactttttagcatcttgtgtgtgagtgaataacaaac 206  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  160 acacctagaaatctaac-aaaaagtgtatattagagactacatgcatgagaaccctgcactttttagcatcttgtgtgtgagtgaataacaaac 252  T

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Target: scaffold1031; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 1795 - 1882
Alignment:
Q  18 acactagccactattctttccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcact 105  Q
    ||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  1795 acactggccactattctttccatttacaaaagtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcact 1882  T

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Target: scaffold1031; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 3254 - 3289
Alignment:
Q  13 cagagacactagccactattctttccatttacaaaa 48  Q
    |||| |||||||||||||||||||||||||||||||    
T  3254 cagaaacactagccactattctttccatttacaaaa 3289  T

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Target: scaffold1037 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 1 - 134
Alignment:
Q  72 acaagaaactacaaacaaaataacaaaattcactcattttaacacctagaaatctaacaaaaaagtgtatattagagactacatgcatgagaacccagca 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  1 acaagaaactacaaacaaaataacaaaattcactcattttaacacctagaaatctaacaaaa-agtgtatattagagactacatgcatgagaaccctgca 99  T
Q  172 ctttttagcatcttgtgtgtgagtgaataacaaac 206  Q
    |||||||||||||||||||||||||||||||||||    
T  100 ctttttagcatcttgtgtgtgagtgaataacaaac 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 3135 - 3256
Alignment:
Q  13 cagagacactagccactattctttccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcatttta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3135 cagaaacactagccactattctttccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcatttta 3234  T
Q  113 acacctagaaatctaacaaaaa 134  Q
    ||||||||||||||||||||||    
T  3235 acacctagaaatctaacaaaaa 3256  T

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Target: scaffold1037; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 1677 - 1764
Alignment:
Q  18 acactagccactattctttccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcact 105  Q
    ||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  1677 acactggccactattctttccatttacaaaagtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcact 1764  T

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