View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_38 (Length: 214)
Name: NF10638_low_38
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 13441597 - 13441424
Alignment:
| Q |
20 |
agaacaatgaactacgtgaatggctgaaacagattaagcgggtcttctacgatgccgaagatgtaatcgatgattttgaatgtgaggcctcacgaaagca |
119 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |
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| T |
13441597 |
agaacaatgaactaggtgaatggctgaaacagattaagcgggtcttctacgatgccgaagatgtaatcgatgattttgaatgtgaagccttacaaaagca |
13441498 |
T |
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| Q |
120 |
aatcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttctcgaattctaatcctcttgtttatc |
193 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
13441497 |
aatcatcaacacttcaggtagcatcagaaggaaagtaaaatgtttcttctcggattctaatcctcttgtttatc |
13441424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 49351506 - 49351679
Alignment:
| Q |
20 |
agaacaatgaactacgtgaatggctgaaacagattaagcgggtcttctacgatgccgaagatgtaatcgatgattttgaatgtgaggcctcacgaaagca |
119 |
Q |
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|||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||| |||||||| |
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| T |
49351506 |
agaacaatgagctacgtgaatggttgaaacagattaagcgcgtcttctacgatgccgaagatgttatagatgatttcgaatgtgaggccttgcgaaagca |
49351605 |
T |
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| Q |
120 |
aatcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttctcgaattctaatcctcttgtttatc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49351606 |
cgtcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatc |
49351679 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 49340142 - 49340315
Alignment:
| Q |
20 |
agaacaatgaactacgtgaatggctgaaacagattaagcgggtcttctacgatgccgaagatgtaatcgatgattttgaatgtgaggcctcacgaaagca |
119 |
Q |
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|||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||||| || |||||||| ||||||||||||| |||||||| |
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| T |
49340142 |
agaacaatgagctacgtgaatggctgaaacagattaaccgtgttttctacgatgccgaagatgttatagatgatttcgaatgtgaggccttgcgaaagca |
49340241 |
T |
|
| Q |
120 |
aatcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttctcgaattctaatcctcttgtttatc |
193 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49340242 |
cgtcatcaacacttctggtagcatcagaaggaaggtaaaatgtttcttctcaaattctaatcctcttgtttatc |
49340315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 32784769 - 32784598
Alignment:
| Q |
20 |
agaacaatgaactacgtgaatggctgaaacagattaagcgggtcttctacgatgccgaagatgtaatcgatgattttgaatgtgaggcctcacgaaagca |
119 |
Q |
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||||| |||| || ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |||||||| |
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| T |
32784769 |
agaaccatgagctgcgtgaatggttgaaacagattaagcgggtcttctatgatgccgaagatgtaatcgatgattttgagtgcgaggccttgcgaaagca |
32784670 |
T |
|
| Q |
120 |
aatcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttctcgaattctaatcctcttgttta |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
32784669 |
catcatcaacacttcaggtagcatcagaaggaaggtaaaacgtttcttctcaaattctaatcctcttgttta |
32784598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 29603373 - 29603214
Alignment:
| Q |
34 |
cgtgaatggctgaaacagattaagcgggtcttctacgatgccgaagatgtaatcgatgattttgaatgtgaggcctcacgaaagcaaatcatcaacactt |
133 |
Q |
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|||||||||||| ||||||| || || |||||||||||||| |||||||||||| |||||||||| || ||||| | |||||||| | ||||||||| |
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| T |
29603373 |
cgtgaatggctgcaacagatcaaacgtgtcttctacgatgcagaagatgtaatcaatgattttgagtgcgaggcattgcgaaagcacgtagtcaacactt |
29603274 |
T |
|
| Q |
134 |
caggtagcatcagaaggaaggtaaaatgtttcttctcgaattctaatcctcttgtttatc |
193 |
Q |
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| ||||||||||||||||||||| | ||| ||| || | |||||||||||||||||||| |
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| T |
29603273 |
ctggtagcatcagaaggaaggtacgacgttacttatccagttctaatcctcttgtttatc |
29603214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 29749921 - 29750080
Alignment:
| Q |
34 |
cgtgaatggctgaaacagattaagcgggtcttctacgatgccgaagatgtaatcgatgattttgaatgtgaggcctcacgaaagcaaatcatcaacactt |
133 |
Q |
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|||||||||||| ||||||| || || |||||||||||||| |||||||||||| |||||||||| || ||||| | |||||||| | ||||||||| |
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| T |
29749921 |
cgtgaatggctgcaacagatcaaacgtgtcttctacgatgcagaagatgtaatcaatgattttgagtgcgaggcattgcgaaagcacgtagtcaacactt |
29750020 |
T |
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| Q |
134 |
caggtagcatcagaaggaaggtaaaatgtttcttctcgaattctaatcctcttgtttatc |
193 |
Q |
| |
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| ||||||||||||||||||||| | ||| ||| || | |||||||||||||||||||| |
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| T |
29750021 |
ctggtagcatcagaaggaaggtacgacgttacttatccagttctaatcctcttgtttatc |
29750080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 29742926 - 29743043
Alignment:
| Q |
76 |
gaagatgtaatcgatgattttgaatgtgaggcctcacgaaagcaaatcatcaacacttcaggtagcatcagaaggaaggtaaaatgtttcttctcgaatt |
175 |
Q |
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||||||||||||||||||||| | |||||||| | || ||||| || |||||||||| ||||||||| ||||||||||| || | | |||||| | || |
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| T |
29742926 |
gaagatgtaatcgatgattttcagtgtgaggcattgcggaagcacatagtcaacacttctggtagcatcggaaggaaggtacaacgatacttctccagtt |
29743025 |
T |
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| Q |
176 |
ctaatcctcttgtttatc |
193 |
Q |
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||||| ||||||||||| |
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| T |
29743026 |
ctaattttcttgtttatc |
29743043 |
T |
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