View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_4 (Length: 386)
Name: NF10638_low_4
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 2101494 - 2101806
Alignment:
| Q |
13 |
cagagaggtgaatcgttcatcttcttcatttatgaatgattaggatctgtttggcaaaccgaaaatttggattatgtttcataagcttttaaaaaagttt |
112 |
Q |
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| T |
2101494 |
cagagaggtgaatcgttcatcttcttcatttatgaatgattaggatctgtttggcaaaccgcaaatttggattatgtttcataagcttttaaaaaagttt |
2101593 |
T |
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| Q |
113 |
tgttttgtaattttcacgttttcatgagcttatagtttatatttaccggcttatatga-ttttttataacctttatcatttttcattctcaattttaacc |
211 |
Q |
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| T |
2101594 |
tgttttgtaattttcacgttttcacgagcttatagtttatatttacaggcttatatgatttttttataacctttatcatttttcattctcaattttaacc |
2101693 |
T |
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| Q |
212 |
ttgtagctttagttgaactaacttattagacactacacatgttaggtgtgaacacttttacccgatttgaatcttatgtgtc-taagtttttggtggtgt |
310 |
Q |
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| T |
2101694 |
ttgtagctttagttgaactaatttattagacactacacatgttaggtgtg-acacttttacccgatttgaatcttatgtgtcttaagtttttggtggtgt |
2101792 |
T |
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| Q |
311 |
aaccagtgttatta |
324 |
Q |
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| T |
2101793 |
aaccagtgttatta |
2101806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 2102059 - 2102109
Alignment:
| Q |
319 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgat |
369 |
Q |
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| T |
2102059 |
ttattatttatacactacattacacttcaaatgtcatcctaatgtattgat |
2102109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 39185054 - 39184928
Alignment:
| Q |
42 |
ttatgaatgattaggatctgtttggcaaaccgaaaatttggattatgtttcataagcttttaaaaaagttttgttttgtaattttcacgttttcatgagc |
141 |
Q |
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|||| |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
39185054 |
ttatcaatggttaggatctgtttggcaaaccgcaaatttggattatgttttataagcttttaaaagagttttgttttgtaattttcacgttttcaagagc |
39184955 |
T |
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| Q |
142 |
ttatagtttatatttaccggcttatat |
168 |
Q |
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| T |
39184954 |
ttatagtttatatttaccggcttatat |
39184928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 39184892 - 39184848
Alignment:
| Q |
184 |
ttatcatttttcattctcaattttaaccttgtagctttagttgaa |
228 |
Q |
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| T |
39184892 |
ttatcatttttcattctcaattttaaccttgtagctttaattgaa |
39184848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 39184433 - 39184394
Alignment:
| Q |
285 |
ttatgtgtctaagtttttggtggtgtaaccagtgttatta |
324 |
Q |
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| T |
39184433 |
ttatgtgtctaagtttttggtggtgtaactagtgttatta |
39184394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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