View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10638_low_40 (Length: 206)

Name: NF10638_low_40
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10638_low_40
NF10638_low_40
[»] chr5 (9 HSPs)
chr5 (14-189)||(22292199-22292374)
chr5 (14-189)||(28246077-28246252)
chr5 (34-189)||(18759536-18759691)
chr5 (10-189)||(21092021-21092206)
chr5 (26-186)||(16084894-16085054)
chr5 (26-163)||(19741687-19741824)
chr5 (25-190)||(2157933-2158098)
chr5 (116-165)||(34920176-34920225)
chr5 (35-166)||(23622363-23622494)
[»] chr4 (6 HSPs)
chr4 (14-189)||(30859183-30859358)
chr4 (14-189)||(55227432-55227607)
chr4 (18-189)||(30191096-30191267)
chr4 (26-185)||(18877998-18878157)
chr4 (14-143)||(54823535-54823664)
chr4 (56-190)||(19068961-19069095)
[»] chr2 (8 HSPs)
chr2 (14-189)||(16206359-16206534)
chr2 (26-186)||(11502145-11502305)
chr2 (29-189)||(23762667-23762827)
chr2 (24-159)||(36641209-36641344)
chr2 (29-171)||(23761534-23761676)
chr2 (29-171)||(23789678-23789820)
chr2 (33-189)||(2058528-2058684)
chr2 (26-165)||(27268045-27268185)
[»] chr3 (13 HSPs)
chr3 (14-189)||(17789972-17790147)
chr3 (14-189)||(19098414-19098589)
chr3 (14-189)||(31228058-31228233)
chr3 (14-189)||(6006180-6006355)
chr3 (14-189)||(53437356-53437531)
chr3 (26-186)||(31935063-31935223)
chr3 (26-186)||(31661130-31661290)
chr3 (26-186)||(31973321-31973481)
chr3 (14-147)||(53394697-53394830)
chr3 (86-187)||(19603136-19603237)
chr3 (26-186)||(31808985-31809145)
chr3 (17-190)||(16739578-16739751)
chr3 (95-165)||(38015288-38015358)
[»] chr1 (5 HSPs)
chr1 (14-189)||(30033402-30033577)
chr1 (26-186)||(21701630-21701790)
chr1 (47-162)||(49372171-49372286)
chr1 (29-162)||(40490174-40490307)
chr1 (26-159)||(41117039-41117172)
[»] chr8 (11 HSPs)
chr8 (14-189)||(14505541-14505716)
chr8 (14-189)||(15990555-15990730)
chr8 (14-189)||(37590182-37590357)
chr8 (18-189)||(1186365-1186536)
chr8 (26-186)||(27978568-27978728)
chr8 (26-186)||(28035837-28035997)
chr8 (26-186)||(34724010-34724170)
chr8 (14-143)||(19299166-19299295)
chr8 (29-186)||(4518177-4518334)
chr8 (34-150)||(26932026-26932142)
chr8 (27-170)||(35284873-35285016)
[»] chr7 (13 HSPs)
chr7 (14-189)||(32480035-32480210)
chr7 (45-189)||(3896285-3896429)
chr7 (14-190)||(3205276-3205452)
chr7 (26-186)||(4646109-4646269)
chr7 (26-186)||(24226364-24226524)
chr7 (26-186)||(41601256-41601416)
chr7 (21-159)||(26016378-26016516)
chr7 (46-162)||(11342940-11343056)
chr7 (27-186)||(8118957-8119116)
chr7 (24-190)||(15633048-15633214)
chr7 (106-162)||(33611270-33611326)
chr7 (107-190)||(13015201-13015284)
chr7 (130-164)||(27810320-27810354)
[»] chr6 (6 HSPs)
chr6 (25-186)||(9959050-9959211)
chr6 (122-189)||(1493441-1493508)
chr6 (44-120)||(16890100-16890176)
chr6 (27-170)||(31028967-31029110)
chr6 (26-165)||(34355901-34356039)
chr6 (125-186)||(16887128-16887189)
[»] scaffold0252 (1 HSPs)
scaffold0252 (26-186)||(7742-7902)
[»] scaffold0789 (1 HSPs)
scaffold0789 (80-186)||(4383-4489)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 22292374 - 22292199
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22292374 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 22292275  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22292274 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgcagccctaaagcttcacc 22292199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 28246252 - 28246077
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    ||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||||    
T  28246252 aagaaagtattgaacaaagaacaacaggaggaaataatgcagccaaattcggacaagtcgttcctggtagaaaggaaggcttgagctgtcaacttagagt 28246153  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  28246152 ttgtttcaaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgcatccctaaagcttcacc 28246077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 18759691 - 18759536
Alignment:
Q  34 acgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatccacattg 133  Q
    ||||| ||||||||||||||| |||||||||||||| ||||| || ||||||||||| || |||| ||||||||| || |||||||| ||||||| ||||    
T  18759691 acgacgggaggaaataatgcagccaaattcggacaaatcgttcctggtagaaaggaatgcatcagttgtcaactttgaatctgtttcaaaatccatattg 18759592  T
Q  134 tcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||| |||||||| ||||||||||||||||| ||||| | |||||||||||||||    
T  18759591 tcaaagtgcatatccctcaaccattgcaaagcggagtgcatccctaaagcttcacc 18759536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 21092206 - 21092021
Alignment:
Q  10 agagaagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaactta 109  Q
    |||||| || ||||| |||||||||||||| || ||||||||||| ||||||||||| ||||||||  | || |||||||| || |||||||||||||||    
T  21092206 agagaaaaaggtactaaacaaagaacgacaagatgaaataatgcagccaaattcggataagtcgttcttggttgaaaggaaagcatcagctgtcaactta 21092107  T
Q  110 gagtct------gtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||      ||||  ||||||||||| |||||||||||||||||||||||||||| ||||||||| | |||||||||||||||    
T  21092106 gagtctaagtctgttttaaaatccacattatcaaactgcatatcactcaaccattgcatagcagagtgcaaccctaaagcttcacc 21092021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 16085054 - 16084894
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    |||||||||||||| || ||||||||  | |||||||| |||| |||||| |  |||||||||||| | ||| |||| |  ||||| |||||||| || |    
T  16085054 aacaaagaacgacaagaagaaataatagaaccaaattcagacaggtcgttccgtgtagaaaggaagacatcaactgttactttagaatctgtttcaaagt 16084955  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    ||||||| || |  |||||||||||||||||||||||||||||||| ||||||||||||||    
T  16084954 ccacattatccagttgcatatcactcaaccattgcaaagcagagtgcagccctaaagcttc 16084894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 19741687 - 19741824
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    |||||||||||||| || ||||||||||| ||||||||||||  ||| || ||   ||| || || || ||||  ||||||||| | || ||||| ||||    
T  19741687 aacaaagaacgacaagaagaaataatgcagccaaattcggacgtgtcattcctgtcagagagaaaagcatcagacgtcaacttaaaatccgtttcaaaat 19741786  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaa 163  Q
    | ||||| ||||||||||| ||||| ||||||||||||    
T  19741787 ctacattatcaaactgcatgtcacttaaccattgcaaa 19741824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 2157933 - 2158098
Alignment:
Q  25 gaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaa 124  Q
    |||||| |||||||| || ||||||||||| |||||||||||   ||| || ||    || || || || ||||| | ||| ||||| ||||||||||||    
T  2157933 gaacaacgaacgacaagaagaaataatgcagccaaattcggatgtgtcattcctgtcggagagaaaagcatcagcagacaatttagaatctgtttcgaaa 2158032  T
Q  125 tccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacct 190  Q
    |||||| | ||||||||||| || ||||||||||| | ||||| ||| | ||| || |||||||||    
T  2158033 tccacactatcaaactgcatgtcgctcaaccattggagagcagcgtgcaacccaaacgcttcacct 2158098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 34920176 - 34920225
Alignment:
Q  116 gtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagc 165  Q
    ||||| ||||||||||| ||||||||||||||||| | ||||||||||||    
T  34920176 gtttcaaaatccacattatcaaactgcatatcactgagccattgcaaagc 34920225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 23622494 - 23622363
Alignment:
Q  35 cgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgt 134  Q
    ||||| || ||||||||||| |||||||| || | ||||| || ||||||| | || || |||   || | ||| | ||| ||||| ||||| |||||||    
T  23622494 cgacaagaagaaataatgcacccaaattcagaaatgtcgtctcgagtagaatgaaaagcatcaagagtaatcttggtgtcggtttcaaaatcaacattgt 23622395  T
Q  135 caaactgcatatcactcaaccattgcaaagca 166  Q
    |||| |||||||||||| ||||||||| ||||    
T  23622394 caaattgcatatcactcgaccattgcatagca 23622363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 30859358 - 30859183
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30859358 aagaaagtactgaacaaagaacgacatgaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 30859259  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30859258 ctgtttcgaaatccacattgtcaaattgcatatcactcaaccattgcaaagcagagtgcagccctaaagcttcacc 30859183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 55227607 - 55227432
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55227607 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 55227508  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||    
T  55227507 ctgtttcgaaatccacattgtcaaactgcatttcactaaaccattgcaaagcagagtgcacccctaaagcttcacc 55227432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 30191096 - 30191267
Alignment:
Q  18 aagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgt 117  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  | |||||||||||||| |||||||||||||||||||||||    
T  30191096 aagtactgaacaaagaacgacaggagaaaataatgcagccaaattcggacaagtcgttcatggtagaaaggaaggcgtcagctgtcaacttagagtctgt 30191195  T
Q  118 ttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  30191196 ttcaaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgcatccctaaagcttcacc 30191267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 18878157 - 18877998
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    |||||||||||||| |||||||||||||| | |||||| ||||||||||| |||||| |||||||||| ||| | || || |||||||||||| | || |    
T  18878157 aacaaagaacgacatgaggaaataatgcaacaaaattcagacaagtcgttcctagtaaaaaggaaggcatcaaccgttaatttagagtctgttccaaagt 18878058  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagctt 185  Q
    | || || |||| |||||||||| ||||||||||||||| |||||| |||||||||||||    
T  18878057 cgacgttatcaatctgcatatcaatcaaccattgcaaaggagagtgcagccctaaagctt 18877998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 54823664 - 54823535
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    |||||||| ||||||||||||||||||||||||||||| || | ||||| ||||||||| || |||||||||||||| || |||||| ||||||||||||    
T  54823664 aagaaagtgctgaacaaagaacgacaggaggaaataatacagctaaatttggacaagtcattcctagtagaaaggaaagcatcagctatcaacttagagt 54823565  T
Q  114 ctgtttcgaaatccacattgtcaaactgca 143  Q
    ||||||| ||||| || |||||||| ||||    
T  54823564 ctgtttcaaaatcgacgttgtcaaattgca 54823535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 19069095 - 19068961
Alignment:
Q  56 ccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaactgcatatcactcaacc 155  Q
    |||||||||||||||||||| ||  |||| ||||| || |||||||||||||| ||||||||||| ||||||| ||| ||||||||||| ||||||||||    
T  19069095 ccaaattcggacaagtcgttcctgctagagaggaaagcatcagctgtcaacttcgagtctgtttcaaaatccatattatcaaactgcatgtcactcaacc 19068996  T
Q  156 attgcaaagcagagtgtagccctaaagcttcacct 190  Q
    |||| | | |||| || | |||||| |||||||||    
T  19068995 attgtacaacagaatgcaaccctaaggcttcacct 19068961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 16206534 - 16206359
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16206534 aagaaagtaatgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 16206435  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16206434 ctgtttcaaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgcagccctaaagcttcacc 16206359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 11502305 - 11502145
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    ||||||||||||||||  | ||||||  | |||||||| || | |||||  |  |||| ||||||||| ||| |||| |  || |||||||||||||| |    
T  11502305 aacaaagaacgacaggttgtaataatagaaccaaattcagaaaggtcgtcccgtgtagcaaggaaggcatcaactgtgacttttgagtctgtttcgaagt 11502206  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    ||||||| ||||| |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  11502205 ccacattatcaaattgcatatcgctcatccattgcaaagcagaatgtagccctaaagcttc 11502145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 23762667 - 23762827
Alignment:
Q  29 aaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatcca 128  Q
    ||||||||||| ||||||||||| || |||||||| ||   |||||| |||||||| || || || ||  | |||| |||||||||||||||||| ||||    
T  23762667 aaagaacgacaagaggaaataatacagccaaattcagatttgtcgttcctagtagacagaaaagcatccaccgtcagcttagagtctgtttcgaagtcca 23762766  T
Q  129 cattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    |||| ||||| |||||| ||  |||||| || ||| | ||||| |  || |||||||||||    
T  23762767 cattatcaaagtgcataccatccaaccactgtaaatctgagtgcaagcccaaagcttcacc 23762827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 36641344 - 36641209
Alignment:
Q  24 tgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaa 123  Q
    ||||||| |||||||| || ||||||||||| |||||||||||   |||||| |||  ||| || || || |||||   ||| ||||| |||||||| ||    
T  36641344 tgaacaacgaacgacaagaagaaataatgcagccaaattcggatgtgtcgttcctatcagagagaaaagcatcagcaaacaatttagaatctgtttcaaa 36641245  T
Q  124 atccacattgtcaaactgcatatcactcaaccattg 159  Q
    ||||||| | ||||||||||| || |||||||||||    
T  36641244 atccacactatcaaactgcatgtcgctcaaccattg 36641209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 23761534 - 23761676
Alignment:
Q  29 aaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatcca 128  Q
    ||||||||| | ||||||||||| || |||||||| ||   |||||| |||||||| |  || || ||  | |||| |||||||||||||||||| ||||    
T  23761534 aaagaacgataagaggaaataatacaaccaaattcagatgtgtcgttcctagtagacaacaaagcatccaccgtcagcttagagtctgtttcgaagtcca 23761633  T
Q  129 cattgtcaaactgcatatcactcaaccattgcaaagcagagtg 171  Q
    |||| ||||| |||||||||   |||||||| ||||| |||||    
T  23761634 cattatcaaagtgcatatcatcaaaccattgtaaagccgagtg 23761676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 23789678 - 23789820
Alignment:
Q  29 aaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatcca 128  Q
    ||||||||| | ||||||||||| || |||||||| ||   |||||| |||||||| |  || || ||  | |||| |||||||||||||||||| ||||    
T  23789678 aaagaacgataagaggaaataatacaaccaaattcagatgtgtcgttcctagtagacaacaaagcatccaccgtcagcttagagtctgtttcgaagtcca 23789777  T
Q  129 cattgtcaaactgcatatcactcaaccattgcaaagcagagtg 171  Q
    |||| ||||| |||||||||   |||||||| ||||| |||||    
T  23789778 cattatcaaagtgcatatcatcaaaccattgtaaagccgagtg 23789820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 2058684 - 2058528
Alignment:
Q  33 aacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatccacatt 132  Q
    ||||||| || ||||||||| | |||||||| ||   ||| ||||||||||| || || || |||| ||| |  |||||||| ||||| ||||||||  |    
T  2058684 aacgacaagatgaaataatggaaccaaattcagatgtgtcatttctagtagacagaaaagcatcagatgtgactttagagtccgtttcaaaatccacgct 2058585  T
Q  133 gtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
     || |||||||||||||| | |||||||||||| || ||||  ||||| ||||||||    
T  2058584 atcgaactgcatatcacttagccattgcaaagccgaatgtaaacctaaggcttcacc 2058528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 27268045 - 27268185
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcat-ccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaa 124  Q
    ||||||||| |||| || |||||||||||  ||||||||||||  ||| |||||   ||| || || || ||||  ||||||||| | || ||||| |||    
T  27268045 aacaaagaatgacaagaagaaataatgcaaaccaaattcggacgtgtcatttctgtcagagagaaaagcatcagacgtcaacttaaaatccgtttcaaaa 27268144  T
Q  125 tccacattgtcaaactgcatatcactcaaccattgcaaagc 165  Q
    |||||||| ||||||| ||| ||||| ||||||||||||||    
T  27268145 tccacattatcaaacttcatgtcacttaaccattgcaaagc 27268185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 17790147 - 17789972
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  17790147 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcagataagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 17790048  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  17790047 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagactgcagccctaaagcttcacc 17789972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 19098589 - 19098414
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  19098589 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcagataagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 19098490  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  19098489 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagactgcagccctaaagcttcacc 19098414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 31228233 - 31228058
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31228233 aagaaagtactgaataaagaacgacgggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagttgtcaacttagagt 31228134  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31228133 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgcagccctaaagcttcacc 31228058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 6006180 - 6006355
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6006180 aagaaagtactgaacaaagaacgacatgaggaaataatgcatccaagttcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 6006279  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||    
T  6006280 ctgtttcgaaatccacattgtcaaattgcatatcactcaaccattgcaaagcagagtgcagtcctaatgcttcacc 6006355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 53437531 - 53437356
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    |||||||| |||||||| ||||| || |||||||||||||| |||||||||||||||||||| ||  ||||||||||||| ||| |||| || || ||||    
T  53437531 aagaaagtgctgaacaacgaacggcaagaggaaataatgcaaccaaattcggacaagtcgttcctgctagaaaggaaggcatcaactgttaattttgagt 53437432  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||| |||||||||| |||||||| |||||||||||||||||||| ||| ||||| |||||||| ||||||||    
T  53437431 ctgtttcaaaatccacatcgtcaaactacatatcactcaaccattgcatagcggagtgcagccctaaggcttcacc 53437356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 31935223 - 31935063
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    |||||||||||||| || |  |||||  | |||||||| ||||||||||| |  |||| ||||||||| ||| |||| || ||||||||||||||||| |    
T  31935223 aacaaagaacgacaagaagtcataatagagccaaattcagacaagtcgttccgtgtagcaaggaaggcatcaactgttaatttagagtctgtttcgaagt 31935124  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  31935123 ccacattatcaaactgcatatcactcatccattgcaaagcagagtgcagccctaaagcttc 31935063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 31661130 - 31661290
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    |||||||||||||| || |  |||||  | |||||||| ||||| ||||| |  |||| ||||||||| ||| |||| || ||||||||||||||||| |    
T  31661130 aacaaagaacgacaagaagtcataatagagccaaattcagacaactcgttccatgtagcaaggaaggcatcaactgttaatttagagtctgtttcgaagt 31661229  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  31661230 ccacattatcaaactgcatatcactcatccattgcaaagcagagtgcagccctaaagcttc 31661290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 31973481 - 31973321
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    |||||||||||||| || |  |||||  | |||||||| ||||||||||| |  |||| ||||||||| ||| |||| || ||||||||||||||||| |    
T  31973481 aacaaagaacgacaagaagtcataatagagccaaattcagacaagtcgttccgtgtagcaaggaaggcatcaactgttaatttagagtctgtttcgaagt 31973382  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  31973381 ccacattatcaaactgcatatcactcatccattgcaaagcagagtgcagccctaaaacttc 31973321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 53394830 - 53394697
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    |||||| | |||||||| |||||||| |||||||||||||| ||||||||||||||||| || ||  ||||||||||||| ||| || | || || ||||    
T  53394830 aagaaactgctgaacaacgaacgacaagaggaaataatgcaaccaaattcggacaagtcattcctgctagaaaggaaggcatcaactattaattttgagt 53394731  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatc 147  Q
     |||||| |||||||||| |||||||| ||||||    
T  53394730 atgtttcaaaatccacatcgtcaaactacatatc 53394697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 19603136 - 19603237
Alignment:
Q  86 aggaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagctt 185  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||||| | | |||||||||  ||||| ||||    
T  19603136 aggaaagcatcagctgtcaacttcgagtctgtttcgaaatccacattatcaaactgcatgtcattcaaccattgtacaacagagtgtaatcctaaggctt 19603235  T
Q  186 ca 187  Q
    ||    
T  19603236 ca 19603237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 31809145 - 31808985
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    |||||||||||||| || ||||||||  | |||||||| |||| |||||| |  ||||||| |||| | |||  ||| |  |||||  ||||  | || |    
T  31809145 aacaaagaacgacaagaagaaataatagaaccaaattcagacaggtcgttccgtgtagaaaagaagacatcaattgttactttagaaactgtcacaaagt 31809046  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    ||||||| || | |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  31809045 ccacattatcgagctgcatatcactcaaccattgcaaagtagagtgcagccctaaagcttc 31808985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 16739578 - 16739751
Alignment:
Q  17 aaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctg 116  Q
    |||||| ||||||| |||||||| || ||||||||||| |||||||||||   ||| || ||    || || || || ||||| | ||| ||||| ||||    
T  16739578 aaagtagtgaacaacgaacgacaagaagaaataatgcagccaaattcggatgtgtctttcctgtcggagagaaaagcatcagcagacaatttagaatctg 16739677  T
Q  117 tttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacct 190  Q
    |||||||||||||| | ||||||| ||| || ||||||||||| | ||||| ||| | ||| || |||||||||    
T  16739678 tttcgaaatccacactatcaaacttcatgtcgctcaaccattggagagcagcgtgcaacccaaacgcttcacct 16739751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 38015288 - 38015358
Alignment:
Q  95 tcagctgtcaacttagagtctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagc 165  Q
    ||||| ||||||||||| |  ||||| ||||||||||| ||||||||||| ||||| | |||||| |||||    
T  38015288 tcagccgtcaacttagaattcgtttcaaaatccacattatcaaactgcatgtcactgagccattgtaaagc 38015358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 30033577 - 30033402
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30033577 aagaaagtattgaacaaagaacgacatgaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 30033478  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30033477 ctgtttcgaaatccacattgtcaaattgcatatcactcaaccattgcaaagcagagtgcagccctaaagcttcacc 30033402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 21701630 - 21701790
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    ||||| ||||||||||| ||||||||  | |||||||| | || |||||| |  |||||||||||||| ||| |||| |  ||||| |||||||| || |    
T  21701630 aacaacgaacgacaggaagaaataatagaaccaaattcagtcaggtcgttccgtgtagaaaggaaggcatcaactgttactttagaatctgtttcaaagt 21701729  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21701730 ccacattatcaagctgcatatcactcaaccattgcaaagcagagtgcagccctaaagcttc 21701790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 49372286 - 49372171
Alignment:
Q  47 ataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaactgcatat 146  Q
    |||||||| ||||||||||||  ||| |||||   ||| || || || ||||  ||||||||||| |||||||| ||||||||||| ||||| ||||| |    
T  49372286 ataatgcaaccaaattcggacgtgtcatttctgtcagagagaaaagcatcagacgtcaacttagaatctgtttcaaaatccacattatcaaattgcatgt 49372187  T
Q  147 cactcaaccattgcaa 162  Q
    |||| |||||||||||    
T  49372186 cacttaaccattgcaa 49372171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 40490174 - 40490307
Alignment:
Q  29 aaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatcca 128  Q
    ||||||||||| |||||||| || || ||||||||| |   |||||| ||||||| ||| || || |||  ||||| ||||||||| ||||| |||||||    
T  40490174 aaagaacgacatgaggaaatgatacagccaaattcgaaagtgtcgttcctagtagcaagaaaagcatcatatgtcagcttagagtccgtttcaaaatcca 40490273  T
Q  129 cattgtcaaactgcatatcactcaaccattgcaa 162  Q
    | || ||||   ||||| || |||||||||||||    
T  40490274 cgttatcaagtagcataacattcaaccattgcaa 40490307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 41117172 - 41117039
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    ||||| |||||||| || ||||||||||| |||||||||||   |||||| ||   ||| || || || |||||   ||||||||| |||||||||||||    
T  41117172 aacaacgaacgacaagaagaaataatgcagccaaattcggatgtgtcgttcctgtcagagagaaaagcatcagcaaacaacttagaatctgtttcgaaat 41117073  T
Q  126 ccacattgtcaaactgcatatcactcaaccattg 159  Q
    | ||  | ||||||||||| || |||||||||||    
T  41117072 cgacgctatcaaactgcatgtcgctcaaccattg 41117039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 4e-83; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 14505716 - 14505541
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||    
T  14505716 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcttataagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 14505617  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  14505616 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgcatccctaaagcttcacc 14505541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 15990555 - 15990730
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15990555 aagaaagtaatgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 15990654  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  15990655 ctgtttcaaaatccaaattgtcaaactgcatatcactcaaccattgcaaagcaaagtgcagccctaaagcttcacc 15990730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 37590182 - 37590357
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    |||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| |||    
T  37590182 aagaaaatactgaacaaagaacgacgggaggaaacaatgcatccaaatttggacaagtcgtttctagtagaaaggaaggcttcagccgttaacttaaagt 37590281  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  37590282 ctgtttcgaaatccacattgtcaaattgcatatcactcaaccattgcaaagcatagtgcagccctaaagcttcacc 37590357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 1186536 - 1186365
Alignment:
Q  18 aagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgt 117  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  1186536 aagtacagaataaagaacgacaggaggaaataatgcaaccaaattcggacaagtcgttcctggtagaaaggaaggcgtcagctgtcaacttagagtctgt 1186437  T
Q  118 ttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||| |||| || |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  1186436 ttcaaaattcatattgtcaaactgcatatcactcaaccattgcaaagcagagtgcacccctaaagcttcacc 1186365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 27978728 - 27978568
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    ||||||||||||||||| |||||||| |  |||||||| |||||||| || ||  ||||||||||||| ||| |||| || ||||| | |||||| || |    
T  27978728 aacaaagaacgacaggaagaaataatacggccaaattcagacaagtcattccttttagaaaggaaggcatcaactgttaatttagaatatgtttcaaagt 27978629  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    |||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27978628 ccacgttatcaagctgcatatcactcaaccattgcaaagcagagtgcagccctaaagcttc 27978568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 28035997 - 28035837
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    ||||||||||||||||| |||||||| |  |||||||| |||||||| || ||  ||||||||||||| ||| |||| || ||||| | |||||| || |    
T  28035997 aacaaagaacgacaggaagaaataatacggccaaattcagacaagtcattccttttagaaaggaaggcatcaactgttaatttagaatatgtttcaaagt 28035898  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    |||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28035897 ccacgttatcaagctgcatatcactcaaccattgcaaagcagagtgcagccctaaagcttc 28035837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 34724010 - 34724170
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    ||||||||||||||||| | ||||||  | |||||||| ||||||||||| |  |||| ||||||||| ||| |||| |  || |||||||||||||| |    
T  34724010 aacaaagaacgacaggaagtaataatagagccaaattcagacaagtcgttccgtgtagcaaggaaggcatcaactgtgacttttgagtctgtttcgaagt 34724109  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    ||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  34724110 ccacattatcaaattgcatatcgctcatccattgcaaagcagagtgtagccctaaagcttc 34724170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 19299166 - 19299295
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    |||||||| ||||||||||||||||||||||||||||| || | ||||| ||||||||| || |||||||||||||| || |||||| ||||||||||||    
T  19299166 aagaaagtgctgaacaaagaacgacaggaggaaataatacagctaaatttggacaagtcattcctagtagaaaggaaagcatcagctatcaacttagagt 19299265  T
Q  114 ctgtttcgaaatccacattgtcaaactgca 143  Q
    ||||||| ||||| || |||||||| ||||    
T  19299266 ctgtttcaaaatcgacgttgtcaaattgca 19299295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 4518334 - 4518177
Alignment:
Q  29 aaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatcca 128  Q
    ||||||||||| || ||||||||  | |||||||| || | ||||||||  |||||||||||||| ||| |||| |  || || |||||  | |||||||    
T  4518334 aaagaacgacaagaagaaataatagaaccaaattcagataggtcgtttcgtgtagaaaggaaggcatcaactgtgactttggaatctgtcacaaaatcca 4518235  T
Q  129 cattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    |||| |||| ||||||||||| ||||||||||||||||||||| | |||||| |||||    
T  4518234 cattatcaagctgcatatcacccaaccattgcaaagcagagtgcaaccctaacgcttc 4518177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 26932026 - 26932142
Alignment:
Q  34 acgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatccacattg 133  Q
    ||||||||| ||||||||||| |||||||| ||  |||||| || ||||| | ||||||| |||   || | ||| || |||||||||||||| || |||    
T  26932026 acgacaggaagaaataatgcacccaaattcagagcagtcgtatcaagtagtatggaaggcatcacaagtaagcttggaatctgtttcgaaatcaacgttg 26932125  T
Q  134 tcaaactgcatatcact 150  Q
    ||||  |||||||||||    
T  26932126 tcaatttgcatatcact 26932142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 35285016 - 35284873
Alignment:
Q  27 acaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatc 126  Q
    ||||||||||||| || ||||||||  | |||||||| || | |||||| |  |||||||||||||| ||  |||| |  ||||| || |   | |||||    
T  35285016 acaaagaacgacaagaagaaataatataaccaaattcagaaaggtcgttccgtgtagaaaggaaggcatcgactgttactttagaatcagacacaaaatc 35284917  T
Q  127 cacattgtcaaactgcatatcactcaaccattgcaaagcagagt 170  Q
    |||||| |||| ||||||||||| || ||| |||||||||||||    
T  35284916 cacattatcaagctgcatatcacccacccactgcaaagcagagt 35284873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 4e-83; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 32480210 - 32480035
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  32480210 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaatttggacaagtcgtttctggcagaaaggaaggcttcagctgtcaacttagagt 32480111  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32480110 ctgtttcgaaatctacattgtcaaactgcatatcactcaaccattgcaaagcagagtgcagccctaaagcttcacc 32480035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 45 - 189
Target Start/End: Complemental strand, 3896429 - 3896285
Alignment:
Q  45 aaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaactgcat 144  Q
    ||||||| || |||||||||||||||||||| ||  |||||||||| || |||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  3896429 aaataatacaaccaaattcggacaagtcgttcctgctagaaaggaatgcatcagctgtcaacttcgagtctgtttcaaaatctacattgtcaaactgcat 3896330  T
Q  145 atcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||||||||||||||| |||||  || | |||||| ||||||||    
T  3896329 atcactcaaccattgcagagcagcatgcaaccctaaggcttcacc 3896285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 3205276 - 3205452
Alignment:
Q  14 aagaaagtactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagt 113  Q
    |||||| ||||||||||  ||||||| || ||||| || ||  ||||||||||||||||||| ||  |||| ||||| || |||||||||||||| ||||    
T  3205276 aagaaattactgaacaacaaacgacaagaagaaatgatacaaacaaattcggacaagtcgttcctgctagagaggaaagcatcagctgtcaactttgagt 3205375  T
Q  114 ctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacct 190  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||||| | | |||| || | |||||| |||||||||    
T  3205376 ctgtttcaaaatccacattatcaaactgcatgtcactcaaccattgtacaacagaatgcaaccctaaggcttcacct 3205452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 4646109 - 4646269
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    |||||||||||||||||  |||||||||| |||||||| ||||||||||| || ||||||||||| || ||| |||| || ||||||| |||| | || |    
T  4646109 aacaaagaacgacaggaaaaaataatgcaaccaaattcagacaagtcgttcctggtagaaaggaatgcatcaactgttaatttagagtatgttgcaaagt 4646208  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    | |  || |||| | |||||||||||| |||||||||||||||||| ||||||||||||||    
T  4646209 cgatgttatcaatcagcatatcactcagccattgcaaagcagagtgcagccctaaagcttc 4646269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 24226364 - 24226524
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    ||||||||||||||||| || ||||| |   ||||||| ||||||||||| || ||||||  |||||| ||| | || || ||||| |||||||| ||||    
T  24226364 aacaaagaacgacaggaagagataataccatcaaattcagacaagtcgttcctggtagaagagaaggcatcaacggttaatttagaatctgtttcaaaat 24226463  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
     |||||| |||| || ||||||||||||||||||||| |||||||| ||||| ||||||||    
T  24226464 tcacattatcaagctacatatcactcaaccattgcaatgcagagtgcagccccaaagcttc 24226524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 41601416 - 41601256
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    ||||||||||||||||| ||||||||  | |||||||| |||| || ||| |  |||||||||||| | ||| |||| |  ||||| |||||| | || |    
T  41601416 aacaaagaacgacaggaagaaataatagaaccaaattcagacaggttgttccgtgtagaaaggaagacatcaactgttactttagaatctgttgcaaagt 41601317  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    ||||||| || | ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  41601316 ccacattatccagctgcatatcactcaaccattgcaaagcagagtgcaaccctaaagcttc 41601256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 26016516 - 26016378
Alignment:
Q  21 tactgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttc 120  Q
    |||||||||| ||||||||||| |||||||| || ||||||| |||||||||||| ||  ||| ||| ||||| ||||| ||||  || |||| | | ||    
T  26016516 tactgaacaatgaacgacaggatgaaataatacagccaaatttggacaagtcgttcctgctagcaagcaaggcatcagcggtcacttttgagtttatgtc 26016417  T
Q  121 gaaatccacattgtcaaactgcatatcactcaaccattg 159  Q
     |||||||| |||||||||||||||||||||||||||||    
T  26016416 aaaatccacgttgtcaaactgcatatcactcaaccattg 26016378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 11343056 - 11342940
Alignment:
Q  46 aataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaactgcata 145  Q
    ||||||||| ||||||||||||  ||| ||||||||||||| ||| || |||| ||| | |||||| || ||||| |||| |||| ||||||| ||||||    
T  11343056 aataatgcaaccaaattcggacgtgtcatttctagtagaaatgaaagcatcagttgttagcttagaatccgtttcaaaattcacactgtcaaattgcata 11342957  T
Q  146 tcactcaaccattgcaa 162  Q
    | |||||||||||||||    
T  11342956 ttactcaaccattgcaa 11342940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 8118957 - 8119116
Alignment:
Q  27 acaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatc 126  Q
    ||||||||||||| || ||||||||  | |||||||| || | |||||| |  |||||||||||||| ||| |||| |  || || || ||  | |||||    
T  8118957 acaaagaacgacaagaagaaataatagaaccaaattcagataggtcgttccgtgtagaaaggaaggcatcaactgttactttggaatcagtcacaaaatc 8119056  T
Q  127 cacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    |||||| |||| ||||||||||| |||||| | |||||||||||| | ||||||||||||    
T  8119057 cacattatcaagctgcatatcacccaaccactacaaagcagagtgcaaccctaaagcttc 8119116  T

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Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 15633214 - 15633048
Alignment:
Q  24 tgaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaa 123  Q
    ||||||| |||||||| || ||||||||||| ||||||||||||  |||||| ||    || || || |  ||||| | ||| ||||| |||||||||||    
T  15633214 tgaacaacgaacgacaagaagaaataatgcagccaaattcggacgtgtcgttcctgtcggagagaaaagaatcagcagacaatttagaatctgtttcgaa 15633115  T
Q  124 atccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacct 190  Q
    ||||||| | ||||||||||| || ||||||||||| | ||||| ||| | ||| || |||||||||    
T  15633114 atccacactatcaaactgcatgtcgctcaaccattggagagcagcgtgcaacccaaacgcttcacct 15633048  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 33611270 - 33611326
Alignment:
Q  106 cttagagtctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaa 162  Q
    |||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  33611270 cttagaatctgtttcaaaatcgacattgtcaaattgcatatcactcaaccattgcaa 33611326  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 13015201 - 13015284
Alignment:
Q  107 ttagagtctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacct 190  Q
    ||||| |||||||||||||||||| | ||||||||||| || |||||| |||| | ||||| ||| | ||| || |||||||||    
T  13015201 ttagaatctgtttcgaaatccacactatcaaactgcatgtcgctcaactattggagagcagcgtgcaacccaaacgcttcacct 13015284  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 27810354 - 27810320
Alignment:
Q  130 attgtcaaactgcatatcactcaaccattgcaaag 164  Q
    ||||||||||||||||||||||||||| |||||||    
T  27810354 attgtcaaactgcatatcactcaaccactgcaaag 27810320  T

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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 9959211 - 9959050
Alignment:
Q  25 gaacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaa 124  Q
    ||||||||||||||| || ||||||||  | |||||||| |||| |||||| |  |||||||||||||| ||| |||| |  ||||| |||||||| ||     
T  9959211 gaacaaagaacgacaagaagaaataatagaaccaaattcagacaggtcgttccgtgtagaaaggaaggcatcaactgttactttagaatctgtttcaaag 9959112  T
Q  125 tccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    |||||||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  9959111 tccacattatcaagctgcatatcacccaaccattgcaaagcagagtgcagccctaaagcttc 9959050  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 1493441 - 1493508
Alignment:
Q  122 aaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttcacc 189  Q
    ||||| ||||| |||||||||||||||||||||||||||| |||| |||| |||||||||||||||||    
T  1493441 aaatcaacattatcaaactgcatatcactcaaccattgcagagcaaagtggagccctaaagcttcacc 1493508  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 16890176 - 16890100
Alignment:
Q  44 gaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttc 120  Q
    ||||||||||| |||||||| ||||||||||  || | |||||||||||| |||| |||||| ||||||||||||||    
T  16890176 gaaataatgcaaccaaattcagacaagtcgtacctggaagaaaggaaggcatcagatgtcaatttagagtctgtttc 16890100  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 31029110 - 31028967
Alignment:
Q  27 acaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatc 126  Q
    ||||||||||||| || ||||||||  | |||||||| || | |||||| |  |||||||||||||| ||  |||| |  ||||| || |   | |||||    
T  31029110 acaaagaacgacaagaagaaataatagaaccaaattcagaaaggtcgttccgtgtagaaaggaaggcatcgactgttactttagaatcagacacaaaatc 31029011  T
Q  127 cacattgtcaaactgcatatcactcaaccattgcaaagcagagt 170  Q
    |||||| |||| ||||||||||| || ||| |||||||||||||    
T  31029010 cacattatcaagctgcatatcacccacccactgcaaagcagagt 31028967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 34355901 - 34356039
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    |||||||||||||| || ||||||||||| |||||||||| || |||||| ||| ||||||| || |  ||||   ||| |||||| || ||||| ||||    
T  34355901 aacaaagaacgacaagaagaaataatgcaaccaaattcgg-catgtcgttcctattagaaagaaaagtatcagaaatcagcttagactccgtttcaaaat 34355999  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagc 165  Q
      ||| | ||||| || || |||||||||||||| |||||    
T  34356000 ttacactatcaaattgtatgtcactcaaccattgtaaagc 34356039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 16887189 - 16887128
Alignment:
Q  125 tccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    ||||| ||| |||| |||||||||||||||||||||| ||| ||||| | | ||||||||||    
T  16887189 tccacgttgccaaaatgcatatcactcaaccattgcagagcggagtgcaacactaaagcttc 16887128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 7902 - 7742
Alignment:
Q  26 aacaaagaacgacaggaggaaataatgcatccaaattcggacaagtcgtttctagtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaat 125  Q
    |||||||||||||| || ||||||||  | |||||||| |||| |||||| |  ||||||||||||||  || || | |  ||||| |||||| | || |    
T  7902 aacaaagaacgacaagaagaaataatagaaccaaattcagacaggtcgttccgtgtagaaaggaaggcagcaactattactttagaatctgttacaaagt 7803  T
Q  126 ccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagccctaaagcttc 186  Q
    ||||||| || | ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  7802 ccacattatcgagctgcatatcacccaaccattgcaaagcagagtgcagccctaaagcttc 7742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0789 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 4383 - 4489
Alignment:
Q  80 gtagaaaggaaggcttcagctgtcaacttagagtctgtttcgaaatccacattgtcaaactgcatatcactcaaccattgcaaagcagagtgtagcccta 179  Q
    |||||||||||||| ||| |||| |  |||||||||||| | || || || || |||| |||||||||||||||||||||||||| |||||| |||||||    
T  4383 gtagaaaggaaggcatcaactgttagtttagagtctgttgcaaagtcgacgttatcaatctgcatatcactcaaccattgcaaagtagagtgcagcccta 4482  T
Q  180 aagcttc 186  Q
    |||||||    
T  4483 aagcttc 4489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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