View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_5 (Length: 365)
Name: NF10638_low_5
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 36707760 - 36707424
Alignment:
| Q |
14 |
actttttactccaccagttccaccaggatatgcacgaggaaagttttcattaatcaacaaactcaaggctgatgtttgtccctgtccatgtttacacttt |
113 |
Q |
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| T |
36707760 |
actttttactccaccagttccaccaggatatgcacgaggaaagttttcattaatcaacaaattcaaggctgatgtttgtccctgtccatgtttacacttt |
36707661 |
T |
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| Q |
114 |
ggttattagtcctcaattgttttgacataataaattctaattgaaaattagatactgtaccttgtaaatgttgctaattggattagtgaatattaagagg |
213 |
Q |
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| T |
36707660 |
ggttattagtcctcaattgttttgacataataaattctaattgaaaattagataccgtaccttgtaaatgttgctaattggattagtgaatattaagagg |
36707561 |
T |
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| Q |
214 |
gtgcattgaggtgctggtccaatacccagaacaggtccgcttccaaatagtaaaggcctaatgtacaatgttccttttccccaaggaggcacctacaatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36707560 |
gtgcattgaggtgctggtccaatacccagaacaggtccgcttccaaatagtaaaggcctaatgtacaatgttccttttccccaaggaggcacctacaatt |
36707461 |
T |
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| Q |
314 |
ccaattacaaatttgagataatcaaactcgaactcat |
350 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
36707460 |
ccaattacaaatttgaaataatcaaactcgaactcat |
36707424 |
T |
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