View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_6 (Length: 363)
Name: NF10638_low_6
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 10451410 - 10451767
Alignment:
| Q |
1 |
catagaaataaataagttattttttctttctttcgattgctcacaagtctctcaaattctcgaaattttcctaaaacacatatgacaatctgcctttctg |
100 |
Q |
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| T |
10451410 |
catagaaataaataagttattttttctttctttcgattgctcacaagtctctcaaattctcaaaattttcctaaaacacatatgacaatctgcctttctg |
10451509 |
T |
|
| Q |
101 |
ttcagatgttataccagaactta-cggaagataacttctaaaaacgacaatgctattggaacttaacttccgatagctttacaaagtgtaattttggaaa |
199 |
Q |
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||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10451510 |
ttctgatgttataccagaacttaacggaagataacttctgaaaacgacaatgctattggaacttaacttccgatagctttacaaagtgtaattttcgaaa |
10451609 |
T |
|
| Q |
200 |
ttcgggtttgagcaattactgtggtttaaagagcaaaattccaagataatggaccattttgatctttttgttttcaaaatttgaaactaaacaacatggc |
299 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10451610 |
ttcgggtttgagcaattactatggtttaaagagcaaaattccaagattatggaccattttgatctttttgttttcaaaattcgaaactaaacaacatggc |
10451709 |
T |
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| Q |
300 |
ccagttgtcacaattgtaaaagttcccttgttgaaataagtggcttgtatgacaaaaa |
357 |
Q |
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| T |
10451710 |
ccaattgtcgcaattgtaaaagttcccttgttgaaataagttgcttgtatgacaaaaa |
10451767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 36187829 - 36188033
Alignment:
| Q |
1 |
catagaaataaataagttattttttctttctttcgattgctcacaagtctctcaaattctcgaaattttcctaaaacacatatgacaatctgcctttctg |
100 |
Q |
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||||||||| |||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| || ||| ||| ||| |
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| T |
36187829 |
catagaaatgaataagttttttttttgtcctttcaattgctcacaagtctctcaaattctcgaaattt-cctataacacatatgataaactgtcttcctg |
36187927 |
T |
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| Q |
101 |
ttcagatgttataccagaactta-cggaagataacttctaaaaacgacaatgctattggaacttaacttccgatagctttacaaagtgtaattttggaaa |
199 |
Q |
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||| ||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||| |
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| T |
36187928 |
ttctgatgttataccggaacttaacggaagataacttctgaaaacaacaatgctattggagcgtaacttccgatagctttacaaagtgtaa-tttggaaa |
36188026 |
T |
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| Q |
200 |
ttcgggt |
206 |
Q |
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|| |||| |
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| T |
36188027 |
tttgggt |
36188033 |
T |
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