View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10638_low_7 (Length: 360)

Name: NF10638_low_7
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10638_low_7
NF10638_low_7
[»] chr3 (5 HSPs)
chr3 (39-360)||(15512953-15513274)
chr3 (45-132)||(39498043-39498131)
chr3 (45-142)||(43630292-43630391)
chr3 (45-135)||(34307999-34308090)
chr3 (83-130)||(31777332-31777380)
[»] chr8 (5 HSPs)
chr8 (49-135)||(1364165-1364252)
chr8 (49-141)||(29358661-29358754)
chr8 (39-91)||(195649-195701)
chr8 (39-91)||(310486-310538)
chr8 (49-135)||(34181549-34181636)
[»] chr6 (3 HSPs)
chr6 (49-133)||(6686829-6686913)
chr6 (48-135)||(31586074-31586161)
chr6 (83-141)||(6686899-6686957)
[»] chr4 (7 HSPs)
chr4 (53-126)||(2324622-2324696)
chr4 (81-130)||(43099004-43099052)
chr4 (92-129)||(55938490-55938527)
chr4 (45-130)||(31867197-31867283)
chr4 (52-113)||(13264589-13264650)
chr4 (84-136)||(29065741-29065793)
chr4 (49-89)||(34320962-34321002)
[»] chr5 (3 HSPs)
chr5 (49-141)||(6761084-6761177)
chr5 (45-137)||(20511437-20511530)
chr5 (53-130)||(6380569-6380647)
[»] chr7 (3 HSPs)
chr7 (49-137)||(1312419-1312508)
chr7 (49-129)||(40800083-40800164)
chr7 (49-129)||(30322730-30322810)
[»] chr2 (2 HSPs)
chr2 (39-96)||(28248984-28249041)
chr2 (84-129)||(37153908-37153953)
[»] chr1 (2 HSPs)
chr1 (45-113)||(37921687-37921755)
chr1 (49-129)||(101494-101574)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 39 - 360
Target Start/End: Complemental strand, 15513274 - 15512953
Alignment:
Q  39 agattgattaaataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaaaaaagaatcttctcttatattaaggatca 138  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15513274 agattgattaaataattaatgtatttggactaaaatgtaaattcaatacattatttatttaataaatctaaaaaagaatcttctcttatattaaggatca 15513175  T
Q  139 gagcagaaaagagagatagatattaataatggatcaccctacacttactatattctcacttcaagtttagatttgtcaatacttacctaacaatattctc 238  Q
    |||||| ||||||||||| ||||||||||||||||| || |  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15513174 gagcaggaaagagagataaatattaataatggatcagccaaagcttactatattctctcttcaagtttagatttgtcaatacttacctaacaatattctc 15513075  T
Q  239 tctcttaagttctacatatgtcaatactacctaacaatattaataatttcattacttgaaatgaaattaaaggcccttttattttcttgatgtgtgaaat 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15513074 tctcttaagttctacatatgtcaatactacctaacaatattaataatttcattacttgaaatgaaattaaaggcccttttattttcttgatgtgtaaaat 15512975  T
Q  339 gaaatgcttagtcaatagtaaa 360  Q
    ||||||||||||||||||||||    
T  15512974 gaaatgcttagtcaatagtaaa 15512953  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 39498043 - 39498131
Alignment:
Q  45 attaaataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaa-aaaagaatcttctcttatattaa 132  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||  ||||||||| | || |||| ||||||||||||| |||||||||    
T  39498043 attaaataattaatgtatttggactacaatgtagactaaatacaacatttatttattgaacctaataaaagaatcttctattatattaa 39498131  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 43630292 - 43630391
Alignment:
Q  45 attaaataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatct--aaaaaagaatcttctcttatattaaggatcagagc 142  Q
    ||||||||||||||||||||  |||| |||||||||| ||| ||| ||||||| ||| || ||  |||||||||| ||||||||||||||||||| ||||    
T  43630292 attaaataattaatgtatttaaactacaatgtaaactaaatgcatcatttattcaatgaacctaaaaaaaagaattttctcttatattaaggatcggagc 43630391  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 135
Target Start/End: Complemental strand, 34308090 - 34307999
Alignment:
Q  45 attaaataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaaaaaa-gaatcttctcttatattaagga 135  Q
    ||||||| ||||||| |||||||||| ||| |||||| |||| || ||||||| ||| || |||||||| ||||||||||||| ||| ||||    
T  34308090 attaaattattaatgaatttggactataatataaactaaatatatcatttattcaatgaacctaaaaaatgaatcttctcttacatttagga 34307999  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 31777380 - 31777332
Alignment:
Q  83 aatacattatttatttaataaatctaa-aaaagaatcttctcttatatt 130  Q
    ||||||||||||||| ||||||  ||| |||||||||||||||||||||    
T  31777380 aatacattatttattcaataaacttaacaaaagaatcttctcttatatt 31777332  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 1364165 - 1364252
Alignment:
Q  49 aataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatcta-aaaaagaatcttctcttatattaagga 135  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||| ||| || ||| |||||||||||||||||||||| ||||    
T  1364165 aataattaatgtatttggactacaatgtaaactaaatacattatttattcaatgaacctacaaaaagaatcttctcttatatttagga 1364252  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 29358661 - 29358754
Alignment:
Q  49 aataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatct-aaaaaagaatcttctcttatattaaggatcagag 141  Q
    |||||||||||||| | ||||| ||| |||||| ||||||| ||||||  |||  |||| ||||||||||||||||||| ||| ||||| ||||    
T  29358661 aataattaatgtatctagactataatataaactaaatacatcatttatacaatgtatctaaaaaaagaatcttctcttaaatttaggataagag 29358754  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 195701 - 195649
Alignment:
Q  39 agattgattaaataattaatgtatttggactagaatgtaaactcaatacatta 91  Q
    ||||| ||||||||||||||||||||| | || |||||||||| |||||||||    
T  195701 agattcattaaataattaatgtatttgcattacaatgtaaactaaatacatta 195649  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 310538 - 310486
Alignment:
Q  39 agattgattaaataattaatgtatttggactagaatgtaaactcaatacatta 91  Q
    ||||| ||||||||||||||||||||| | || |||||||||| |||||||||    
T  310538 agattcattaaataattaatgtatttgcattacaatgtaaactaaatacatta 310486  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 34181549 - 34181636
Alignment:
Q  49 aataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaaaaaa-gaatcttctcttatattaagga 135  Q
    ||||||| |||||| | ||||| ||| |||||| ||||||| ||||||| ||| ||| | ||||| ||||||||||||||||| ||||    
T  34181549 aataatttatgtatatagactataatataaactaaatacatcatttattcaatgaatttgaaaaatgaatcttctcttatatttagga 34181636  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 6686913 - 6686829
Alignment:
Q  49 aataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaaaaaagaatcttctcttatattaag 133  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||||| ||| || |||||||| || ||||| ||||||||||    
T  6686913 aataattaatgtatttggactacaatgtaaactaaatacatcatttattcaatgaacctaaaaaaaaaacttcttttatattaag 6686829  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 31586161 - 31586074
Alignment:
Q  48 aaataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatct-aaaaaagaatcttctcttatattaagga 135  Q
    ||||||||||||||||||||||| ||| |||||| ||||||| ||||||| ||| ||  | ||||||||||||||||||||||| ||||    
T  31586161 aaataattaatgtatttggactacaatataaact-aatacatcatttattcaatgaacataaaaaaagaatcttctcttatatttagga 31586074  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 6686899 - 6686957
Alignment:
Q  83 aatacattatttatttaataaatctaaaaaagaatcttctcttatattaaggatcagag 141  Q
    ||||||||| ||||| ||| || |||||||||| |||||||||||||| |||| |||||    
T  6686899 aatacattaattattcaatgaacctaaaaaagattcttctcttatatttaggaccagag 6686957  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 2324622 - 2324696
Alignment:
Q  53 attaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaaaa-aagaatcttctctta 126  Q
    |||||||||||||||||| |||||||||| |||| |||||||||| ||| || |||||| |||||||||||||||    
T  2324622 attaatgtatttggactacaatgtaaactaaatatattatttattcaatgaacctaaaataagaatcttctctta 2324696  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 43099052 - 43099004
Alignment:
Q  81 tcaatacattatttatttaataaatctaaaaaagaatcttctcttatatt 130  Q
    ||||||||||||||||| ||||||||||||||| |||||||| |||||||    
T  43099052 tcaatacattatttattcaataaatctaaaaaa-aatcttcttttatatt 43099004  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 55938490 - 55938527
Alignment:
Q  92 tttatttaataaatctaaaaaagaatcttctcttatat 129  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  55938490 tttatttaataaatctaaaaaagaatcttctgttatat 55938527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 31867197 - 31867283
Alignment:
Q  45 attaaataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaaaaa-agaatcttctcttatatt 130  Q
    ||||||| ||||||| || | ||||| | | |||||| ||||||||||| ||| |||||||||||||| | ||||||||| ||||||    
T  31867197 attaaattattaatgcatcttgactatattataaactaaatacattattaattcaataaatctaaaaataaaatcttctcctatatt 31867283  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 13264650 - 13264589
Alignment:
Q  52 aattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaaaaaa 113  Q
    |||||||||| ||  |||| ||| |||||||||||||| ||||||| ||||||||| |||||    
T  13264650 aattaatgtacttaaactataatataaactcaatacatcatttattcaataaatctgaaaaa 13264589  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 29065741 - 29065793
Alignment:
Q  84 atacattatttatttaataaatctaaaaaagaatcttctcttatattaaggat 136  Q
    |||| ||| ||||||||||||||||||||| | ||||| |||||||| |||||    
T  29065741 atacgttaattatttaataaatctaaaaaaaattcttcacttatatttaggat 29065793  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 34320962 - 34321002
Alignment:
Q  49 aataattaatgtatttggactagaatgtaaactcaatacat 89  Q
    |||||| ||||||||||||||| |||||||||| |||||||    
T  34320962 aataatcaatgtatttggactacaatgtaaactaaatacat 34321002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 6761084 - 6761177
Alignment:
Q  49 aataattaatgtatttggactagaatgtaaactcaatacattatttatttaat-aaatctaaaaaagaatcttctcttatattaaggatcagag 141  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||| ||| || |  |||||| |||||| |||| |||||| ||||||||    
T  6761084 aataattaatatatttggactacaatgtaaactaaatacattatttattcaatgaacttaaaaaaaaaatcttatcttgtattaaagatcagag 6761177  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 20511530 - 20511437
Alignment:
Q  45 attaaataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaa-aaaagaatcttctcttatattaaggatc 137  Q
    |||||||  ||||||||||| || || ||| |||||| ||||||||||||||  ||||||||||| |||| |||||||||| ||||| ||||||    
T  20511530 attaaatttttaatgtatttagattataatataaactaaatacattatttatacaataaatctaaaaaaataatcttctctcatatttaggatc 20511437  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 6380569 - 6380647
Alignment:
Q  53 attaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaa-aaaagaatcttctcttatatt 130  Q
    |||||||||| | || || ||| |||||| ||||||||||||||| ||| || |||| |||||||||||||||||||||    
T  6380569 attaatgtatatagattataatataaactaaatacattatttattcaatgaacctaataaaagaatcttctcttatatt 6380647  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 1312419 - 1312508
Alignment:
Q  49 aataattaatgtattt-ggactagaatgtaaactcaatacattatttatttaataaatctaaaaaagaatcttctcttatattaaggatc 137  Q
    |||||||||||||||| |||||| |||||||||| |||| || ||||||| ||| | | ||||| | || ||||||||||||||||||||    
T  1312419 aataattaatgtattttggactataatgtaaactaaatatatcatttattcaattactttaaaatataaacttctcttatattaaggatc 1312508  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 40800083 - 40800164
Alignment:
Q  49 aataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaaaa-aagaatcttctcttatat 129  Q
    |||||| ||||||||| ||||| ||||||| || ||||||| ||||||| ||| || |||||| ||||||||||||||||||    
T  40800083 aataatcaatgtatttagactataatgtaatctaaatacatcatttattcaatgaacctaaaaaaagaatcttctcttatat 40800164  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 30322810 - 30322730
Alignment:
Q  49 aataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaaaaaagaatcttctcttatat 129  Q
    |||||||||||||| ||   || ||||||||||  |||||||| ||||||||||||  ||||||| ||| || ||||||||    
T  30322810 aataattaatgtatatgttatacaatgtaaactatatacattaattatttaataaacttaaaaaataattttttcttatat 30322730  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 28249041 - 28248984
Alignment:
Q  39 agattgattaaataattaatgtatttggactagaatgtaaactcaatacattatttat 96  Q
    ||||| ||||||||||||||||||||||  |||||| || ||| ||||||||||||||    
T  28249041 agattcattaaataattaatgtatttggtatagaatatagactaaatacattatttat 28248984  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 37153953 - 37153908
Alignment:
Q  84 atacattatttatttaataaatctaaaaaagaatcttctcttatat 129  Q
    |||||||||||||| ||| ||||||||||||||| || ||||||||    
T  37153953 atacattatttattcaatgaatctaaaaaagaatattttcttatat 37153908  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 37921755 - 37921687
Alignment:
Q  45 attaaataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaaaaaa 113  Q
    ||||||||| | |||||||||||||| | | |||||| ||||||| | ||||||||||||||| |||||    
T  37921755 attaaataacttatgtatttggactatattataaactaaatacatcaattatttaataaatctgaaaaa 37921687  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 101574 - 101494
Alignment:
Q  49 aataattaatgtatttggactagaatgtaaactcaatacattatttatttaataaatctaaaaaagaatcttctcttatat 129  Q
    |||||||||||||| |||  || | |||||||   |||||||| ||||| ||| || ||||||||||||||| ||||||||    
T  101574 aataattaatgtatctggtttacattgtaaaccagatacattaattattcaatgaacctaaaaaagaatcttttcttatat 101494  T

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