View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_8 (Length: 337)
Name: NF10638_low_8
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 4243959 - 4244271
Alignment:
| Q |
9 |
agcaaaggacactcttcatgaatggagttgcatgcaaagtgcaaaaactcaaccaatcaacccgaatcaccatatctcttgggttaaaccaactggcggc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243959 |
agcaaaggacactcttcatgaatggagttgcatgcaaagtgcaaaaactcaaccaatcaacccgaatcaccatatctcttgggttaaaccaactggcggc |
4244058 |
T |
|
| Q |
109 |
atgattaaatgtaacatggatgctgcaatttttcaaaacaacgctgcagcaggttatggcatttgttgtcgaaactctgaaggtgaactcttcttgggta |
208 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| ||||||| ||||||||| |
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| T |
4244059 |
atgattaaatgtaacatggatgccgcaatttttcaaaacaacgttgcagcaggttatggcatctgttgccgaaactctgaagatgaactcctcttgggta |
4244158 |
T |
|
| Q |
209 |
aatctgccatcattcactcatctttatctgttctagaagccgaggcaattactttacttgaagctacgaaattatcaatctcttctggattccatcatgt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4244159 |
aatctgccatcattcactcatctttatctgttctagaagccgaggcaatcgttttacttgaagctatgaaattatcaatctcttctggattccatcatgt |
4244258 |
T |
|
| Q |
309 |
gtactatgaaact |
321 |
Q |
| |
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||||||||||||| |
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| T |
4244259 |
gtactatgaaact |
4244271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 33495617 - 33495303
Alignment:
| Q |
9 |
agcaaaggacactcttcatgaatggagttgcatgcaaagtgcaaaaactcaaccaatcaacccgaatcaccatatctcttgggttaaaccaactggcggc |
108 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||| ||||||||| | ||| | |||||| |||| |||||||||||||||||||| ||| ||| |
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| T |
33495617 |
agcaaatgacactcttcatgaatggaattgcatgcaaagagcaaaaacttagccactaaacccggatcatcatatctcttgggttaaacctcgtgggggc |
33495518 |
T |
|
| Q |
109 |
atgattaaatgtaacatggatgctgcaatttttcaaaacaacgctgcagcaggttatggcatttgttgtcgaaactctgaaggtgaactcttcttgggta |
208 |
Q |
| |
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| ||||||||||||| |||||| | ||||||||||||||| |||||| |||||||| |||| |||||||||| ||| |||||| | |||||| |
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| T |
33495517 |
acgattaaatgtaacgcggatgccacgatttttcaaaacaacaaaatagcaggatatggcatatgttatcgaaactcttgaggcgaactccttatgggta |
33495418 |
T |
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| Q |
209 |
aatctgccatcattcactcatctttatctgttctagaagccgagg--caattactttacttgaagctacgaaattatcaatctcttctggattccatcat |
306 |
Q |
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||||| |||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||| | || ||||||||||||||| ||||||||||||||| |
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| T |
33495417 |
aatcttccatcattcattcatctttatctcttctagaagccgaggcacaattgctttacttgacgttatgaaattatcaatctcctctggattccatcat |
33495318 |
T |
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| Q |
307 |
gtgtactatgaaact |
321 |
Q |
| |
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||||||||||||||| |
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|
| T |
33495317 |
gtgtactatgaaact |
33495303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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