View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10638_low_9 (Length: 319)
Name: NF10638_low_9
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 41885106 - 41885333
Alignment:
| Q |
6 |
attacgggattaatgaaggacttatatgctttgtcatcaatcatcaaagtattagaagcagaatatgggcctcctttctcgacattttcccacacnnnnn |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |||||| |
|
|
| T |
41885106 |
attaagggattaatgaaggacttatatgctttgtcatcaatcatcaaagtattagaagcagaatatgggcctcttttcttcactttttaccacacttttt |
41885205 |
T |
|
| Q |
106 |
nnagttgtttgnnnnnnngaggcttctcttttttctccattgatttcataccaatcatatgaaaacattgactttgatcctacaaaaagtttatcaaaca |
205 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
41885206 |
tgagttctttgaaaaaaagaggcttctcttttttctccattgatttcataccaatacaatagaaacaatgactttgatcctacaaaaagtttatgaaaca |
41885305 |
T |
|
| Q |
206 |
cacaaaataaacgaacaagatttatata |
233 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
41885306 |
cacaaaataaaccaacaagatttatata |
41885333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 41829559 - 41829375
Alignment:
| Q |
6 |
attacgggattaatgaaggacttatatgctttgtcatcaatcatcaaagtattagaagcagaatatgggcctcctttctcgacattttcccacacnnnnn |
105 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
41829559 |
attacgggatcaatgaaggacttatatgctttgtcatcaatcatcaaagtattagaaggagaatatgagcctcctttcttgactttttcccacacttttt |
41829460 |
T |
|
| Q |
106 |
nnagttgtttgnnnnnnngaggcttctcttttttctccattgatttcataccaatcatatgaaaacattgactttgatcctacaa |
190 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
41829459 |
tgagttctttgaaaaaaagaggcttctcttttttctccattgatttcataccaatacaatagaaacaatgactttgatcctacaa |
41829375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 311
Target Start/End: Complemental strand, 34454267 - 34453981
Alignment:
| Q |
30 |
tatgctttgtcatcaatcatcaaagtattagaagcagaatatgggcctcctttctcgacattttcccacacnnnnnnnagttgtttgnnnnnnngaggct |
129 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || | |||||| || | ||| |||||| |
|
|
| T |
34454267 |
tatggtttgtcatcaatcatcaaagtattagaagcagaatatggacctcctttcttgactttattccacactttatttagctccttgaagaaaagaggct |
34454168 |
T |
|
| Q |
130 |
tctcttttttctccattgatttcataccaatcatatgaaaacattgactttgatccta--caaaaagtttatcaaacacacaaaataaacgaacaagatt |
227 |
Q |
| |
|
||||||| |||||| |||| | ||| ||| || ||| | |||||||||||| |||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
34454167 |
tctctttattctcctttgaatacatggcaagagaatcggtacaatcactttgatcctatacaaaaagtttttgaagcacacaaaataaacgaacaagatt |
34454068 |
T |
|
| Q |
228 |
tatatacacaaattgcnnnnnnnnnnnn---gaacacttcaagaaaatgtacccaaacaaatagcagcttatttttggattcttctc |
311 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34454067 |
tatatatacaaattgcaaaaagaaaaaaaaggaacacttcaagaaaatgtacccaaacaaatagcagcttatttttggattcttctc |
34453981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 41829337 - 41829282
Alignment:
| Q |
256 |
gaacacttcaagaaaatgtacccaaacaaatagcagcttatttttggattcttctc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41829337 |
gaacacttcaagaaaatgtacccaaacaaatagcagcttatttttggattcttctc |
41829282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 41885375 - 41885430
Alignment:
| Q |
256 |
gaacacttcaagaaaatgtacccaaacaaatagcagcttatttttggattcttctc |
311 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41885375 |
gaacacttcaagaaaatgtacccaaataaatagcagcttatttttggattcttctc |
41885430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 41891143 - 41891231
Alignment:
| Q |
12 |
ggattaatgaaggacttatatgctttgtcatcaatcatcaaagtattagaagcagaatatgggcctcctttctcgacattttcccacac |
100 |
Q |
| |
|
||||||| ||||||| | |||| | || ||||||||||||| ||||| |||||||||||||| | |||||||| ||||| |||||||| |
|
|
| T |
41891143 |
ggattaaggaaggacctgtatggtctggcatcaatcatcaaggtatttgaagcagaatatggacatcctttcttgacatcatcccacac |
41891231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 41896109 - 41896187
Alignment:
| Q |
6 |
attacgggattaatgaaggacttatatgctttgtcatcaatcatcaaagtattagaagcagaatatgggcctcctttct |
84 |
Q |
| |
|
||||| ||||||| ||| ||||| |||| ||||||||| |||| ||| ||||| ||||||||||| || |||||||||| |
|
|
| T |
41896109 |
attaccggattaaggaaagacttgtatggtttgtcatcgatcagcaacgtatttgaagcagaatacggtcctcctttct |
41896187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 41901151 - 41901228
Alignment:
| Q |
12 |
ggattaatgaaggacttatatgctttgtcatcaatcatcaaagtattagaagcagaatatgggcctcctttctcgaca |
89 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||| | ||| ||||| ||||||||||| || |||||||||| |||| |
|
|
| T |
41901151 |
ggattaagcaaggacttgtatggtttgtcatcaattagcaaggtattggaagcagaatacggtcctcctttcttgaca |
41901228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 41896379 - 41896419
Alignment:
| Q |
260 |
acttcaagaaaatgtacccaaacaaatagcagcttattttt |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
41896379 |
acttcaagtaaatgtacccaaacaaatagtagcttgttttt |
41896419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University