View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10639_high_1 (Length: 625)
Name: NF10639_high_1
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 54819043 - 54818728
Alignment:
| Q |
13 |
atcaaatcaaatgtggggaatcacatatttccaacaaagagaggattcacccactatccgtgtaattagccgaacaaggataaattttacaggccacatt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
54819043 |
atcaaatcaaatgtggggaatcacatatttccaacaaagtgaggattcacccactatccgtgtaatt------------------tttacaggccacatt |
54818962 |
T |
|
| Q |
113 |
gttttggttagtaggattagtgtttgtctataaataccgaacgtctaagctttttcaacataggcaaccaatcaaataagnnnnnnnnatcaagtaatct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || | ||| ||||| |||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
54818961 |
gttttggttagtaggattagtgtttgtctataaataccggacttgtaaatttttttaacataggcaaccaatcaaacaagtttttttg-tcaagtaatct |
54818863 |
T |
|
| Q |
213 |
tgcagctataattcatcttttaagatagataaataattttgcggctcaacaacttctataatttattctaaatcatattcattttcattttccttaactt |
312 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
54818862 |
tgcatctaaaattcatcttttaagatagataaataattttgcggctcaacaacttctataatttattctaaatcttattcattctcattttccttaactt |
54818763 |
T |
|
| Q |
313 |
ttaaatttattggacggcaaactagtaatataaga |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
54818762 |
ttaaatttattggacggcaaactagtaatataaga |
54818728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 361 - 563
Target Start/End: Complemental strand, 54818652 - 54818450
Alignment:
| Q |
361 |
tcataaatgtctttttcaccatacttgggtcactgccacatatatagcgtggtgaatcactgtcaattcaaccgctataaagtgtcatgcgttggtgaga |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54818652 |
tcataaatgtctttttcaccatacttgggtcactgccacatatatagcgtgctgaatcactgtcaattcaaccgctataaagtgtcatgcgttggtgaga |
54818553 |
T |
|
| Q |
461 |
gatgccatgtactaatccatcttttaattatggaataaggtaaaaatcaattttatacctaagaattttatcattatttaatattaagacttaagagcta |
560 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54818552 |
gatgccatgtactaatccatcttttaattctggaattaggtaaaaatcaattttatacctaagaattttatcattatttaatattaagacttaagagcta |
54818453 |
T |
|
| Q |
561 |
caa |
563 |
Q |
| |
|
||| |
|
|
| T |
54818452 |
caa |
54818450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University