View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_high_5 (Length: 333)
Name: NF10639_high_5
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 61 - 328
Target Start/End: Original strand, 43463625 - 43463892
Alignment:
| Q |
61 |
attttaccttttctttgcgtccaatgcaagacttgggaactgtaattttttcatcacagaaacttcatgctattttcgttacacaagtatgctatatatt |
160 |
Q |
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| T |
43463625 |
attttaccttttttttgcgtccaatgcaagacttgggaactgtaattttttcatcacagaaacttcatgctattttcgttacacaagtatgctatatatt |
43463724 |
T |
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| Q |
161 |
ctatcccagttgttccaggcttagcaaccaaccgaaattcttttgagtattagagattcgagaagctacttatcacaaaaaatgtagaagatgtttaaag |
260 |
Q |
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| T |
43463725 |
ctatcccagttgttccaggcttagcaaccaacccaaattctttagagtattagagatttgagaagctacttatcacaaaaaatgtagaagatgtttaaag |
43463824 |
T |
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| Q |
261 |
tttttgatagtatctgaaaatttgtaattcttatatatttgtttcatgttttacggatctgtgctcct |
328 |
Q |
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| T |
43463825 |
tttttgatagtatctgaaaatttgtaattcttatatatttgtttcatgttttacggctcggtgctcct |
43463892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 43458997 - 43459077
Alignment:
| Q |
74 |
tttgcgtccaatgcaagacttgggaactgtaattttttcatcacagaaacttcatgctattttcgttacacaagtatgcta |
154 |
Q |
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| T |
43458997 |
tttgggtccaatgcaggacttaggaactatgattctttcatcacagaaacttcatattattttcattacacaagtatgcta |
43459077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 41206641 - 41206596
Alignment:
| Q |
18 |
aatacatatgtctccccatcctaggttttt-tcccatcatatatat |
62 |
Q |
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| T |
41206641 |
aatacatatgtctccccatcctaggtttttcttccatcatatatat |
41206596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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