View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_10 (Length: 410)
Name: NF10639_low_10
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 404
Target Start/End: Complemental strand, 153342 - 152952
Alignment:
| Q |
14 |
caacaagtcctgtaattaaaccaataagaagtgcaagggtccacttcagaacaacatattggtatatctcaacctttgttcttgacctccagtcctgttt |
113 |
Q |
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| T |
153342 |
caacaagtcctgtaattaaaccaataagaagtgcaagggtccacttcagaacaacatattggtatatctcaacctttgttcttgacctccagtcctgttt |
153243 |
T |
|
| Q |
114 |
caatagatcattctcaattaacctgcatagtacatgccaccaaaattaacacatatctcaattatacttatattcaacacaaacacaacaaacgtttatt |
213 |
Q |
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| T |
153242 |
caatagatcattctcaattaacctgcatagtacatgccaccaaaattaacatatatctcaattatacttatattcaacacaaacacaacaaaagtttatt |
153143 |
T |
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| Q |
214 |
aaaatattagcacaactctgcaaaagtcgtatcaaaaccgacaatcgcaattcaaaaaacactttgaaagctgtaagccatgaagctatgcacaaaataa |
313 |
Q |
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| T |
153142 |
aaaatattaacacaattctgcaaaagtcgtatcaaaaccgacaatcgcaattcaataaacactttgaaagctgtaagccatgaagctatgcacaaaataa |
153043 |
T |
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| Q |
314 |
aacatcttccattgttacactatttttaatttacaaaaccctcccattttttgttagaaaacgtgatagttagagaatttgccccctatgc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
153042 |
aacatcttccattgttacactatttttaatttacaaaaccctcccattttttgttataaaacgtgatagttagagaatttgccccccatgc |
152952 |
T |
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