View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10639_low_11 (Length: 393)

Name: NF10639_low_11
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10639_low_11
NF10639_low_11
[»] chr6 (13 HSPs)
chr6 (1-377)||(11002406-11002782)
chr6 (1-377)||(10968226-10968602)
chr6 (1-377)||(10982176-10982552)
chr6 (5-336)||(11018828-11019159)
chr6 (2-349)||(11079575-11079922)
chr6 (277-340)||(18300125-18300188)
chr6 (28-66)||(4256408-4256446)
chr6 (28-62)||(4490156-4490190)
chr6 (28-62)||(4493252-4493286)
chr6 (28-62)||(4557422-4557456)
chr6 (28-62)||(4592528-4592562)
chr6 (5-51)||(11050229-11050275)
chr6 (29-66)||(4516619-4516656)
[»] chr7 (1 HSPs)
chr7 (28-62)||(3086717-3086751)
[»] scaffold0475 (1 HSPs)
scaffold0475 (28-64)||(3483-3519)
[»] chr2 (1 HSPs)
chr2 (19-63)||(24462263-24462307)


Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 11002782 - 11002406
Alignment:
Q  1 cactccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaa 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002782 cactccttcacaaatagcttccaacactgagttccatccacagtgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaa 11002683  T
Q  101 tttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaa 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002682 tttctcaccaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaa 11002583  T
Q  201 tccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002582 tccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgac 11002483  T
Q  301 gctttgactaggttgcgagtcaagccaaatcaaacacccattttcatctcctccataagaagatgtaatcaaaggtc 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11002482 gctttgactaggttgcgagtcaagccaaatcaaacacccattttcatctcctccataagaagatgtaatcaaaggtc 11002406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 10968602 - 10968226
Alignment:
Q  1 cactccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaa 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||  || || ||  | ||||||||| ||||||||||||||    
T  10968602 cactccttcacaaatagcttccaacaccgagttccatccacaatgtgtcacgaatccaccaatcgagtcatgctttaatattgcaccttgtggtgcccaa 10968503  T
Q  101 tttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaa 200  Q
    |||||  | ||||||||||||| ||| |||||||||||||||||||| || | ||| || ||||||||  | ||||| ||||   |||| ||||| ||||    
T  10968502 tttcttgccaccattcccttttgctttgtcctctccaaaaacccttcaggaagcaactcgtccaaactttgctcctctaagtccaactcactcctaacaa 10968403  T
Q  201 tccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgac 300  Q
     ||| |||||||||||||||||| | ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  10968402 cccacaagaatctttgctcacttatttccaatccaagtgctatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgac 10968303  T
Q  301 gctttgactaggttgcgagtcaagccaaatcaaacacccattttcatctcctccataagaagatgtaatcaaaggtc 377  Q
    ||||||||||| |||||| || |||||| | | |||| ||||||||||| ||||||||||||  |||||||| ||||    
T  10968302 gctttgactagattgcgactcgagccaacttagacactcattttcatcttctccataagaagcggtaatcaatggtc 10968226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 10982552 - 10982176
Alignment:
Q  1 cactccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaa 100  Q
    |||||||||||| | ||||||||| || ||||||||||||||||| |||||||||||||| |  || || ||  | ||||||||| ||||||||||||||    
T  10982552 cactccttcacatacagcttccaacaccgagttccatccacaatgtgtcacgaatccaccgatcgagtcatgctttaatattgcaccttgtggtgcccaa 10982453  T
Q  101 tttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaa 200  Q
    ||||| || ||||||||| |||| || |||||||||||||||||||| || | ||| || ||||||||  | ||||| || |   |||||||||| | ||    
T  10982452 tttcttaccaccattcccctttcttttgtcctctccaaaaacccttcagggagcaactcgtccaaactttgctcctctaaatccaactcgctcctaataa 10982353  T
Q  201 tccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgac 300  Q
     ||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  10982352 cccacaagaatctttgctcacttttttccaatccaagtgctatctcattcaactgagccttagaaaatcttcccatgcttccaaaacttaacaacacgac 10982253  T
Q  301 gctttgactaggttgcgagtcaagccaaatcaaacacccattttcatctcctccataagaagatgtaatcaaaggtc 377  Q
    ||||||| |||||||||| ||||||||| | | |||||||||||||||| ||||||| |||||||  ||||||||||    
T  10982252 gctttgaataggttgcgactcaagccaacttagacacccattttcatcttctccatatgaagatgcgatcaaaggtc 10982176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 5 - 336
Target Start/End: Complemental strand, 11019159 - 11018828
Alignment:
Q  5 ccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaatttc 104  Q
    |||||||||||||||||||| || ||||||||||||||||||||||| |||||||| || || |  ||||||||||| ||| ||||||| ||||||||||    
T  11019159 ccttcacaaatagcttccaacacggagttccatccacaatgagtcacaaatccacccacggagttatgactcaatatcgcaacttgtggggcccaatttc 11019060  T
Q  105 tcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaatcca 204  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||| || || || |||||||| |  |  ||  ||| ||  || ||||| |||| |||    
T  11019059 tcacaaccattcccttgtcctttgtcctctccaaaaacccttctggaaataactcgtccaaactcaacttgtctgagtctggttcactcctaacaaccca 11018960  T
Q  205 taagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgacgctt 304  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||| ||||||||||||    
T  11018959 caagaatctttgctcacttttctccaatccaatagctatctcattcaattgagccctagaaaatcttcccatgcttccaaagctcaacaacacgacgctt 11018860  T
Q  305 tgactaggttgcgagtcaagccaaatcaaaca 336  Q
    ||||| ||||||||||| |||||| |||||||    
T  11018859 tgacttggttgcgagtcgagccaactcaaaca 11018828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 2 - 349
Target Start/End: Complemental strand, 11079922 - 11079575
Alignment:
Q  2 actccttcacaaatagcttccaatactgagttccatccacaatgagtcacgaatccaccaactgattcgtgactcaatattgcatcttgtggtgcccaat 101  Q
    |||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||    || || | ||||| | ||||||||||||| |    
T  11079922 actccttcgcaaatagcttccaacacggagttccatccacaatgagtcacgaacccaccaactgagctatgtcttagtattgaaccttgtggtgcccagt 11079823  T
Q  102 ttctcactaccattcccttttccttcgtcctctccaaaaacccttctggcaacaagtcatccaaactaagttcctccaagtttgactcgctccttacaat 201  Q
    |||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |     |||||||| |||||    
T  11079822 ttctaacaaccattcccttctcctttgtcctctccaaaaacccttctggcaacaactcatccaaacttagttcctccgactccatatcgctcctaacaat 11079723  T
Q  202 ccataagaatctttgctcacttttctccaatccaatagctatctcattcaactgagccttagaaaatctccccatgcttccaaaactcaaaaacacgacg 301  Q
    ||| ||||||||||| |||||||| ||||| ||||||||||||| ||| |  |||||||||||||||||||| | ||||||||| ||||| || ||||||    
T  11079722 ccacaagaatctttgttcacttttttccaaaccaatagctatctgattaatttgagccttagaaaatctccctaagcttccaaagctcaacaaaacgacg 11079623  T
Q  302 ctttgactaggttgcgagtcaagccaaatcaaacacccattttcatct 349  Q
    |||||||  || || || || |||||| ||||||||||| ||| ||||    
T  11079622 ctttgacctggctgtgaatcgagccaactcaaacacccacttttatct 11079575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 18300125 - 18300188
Alignment:
Q  277 gcttccaaaactcaaaaacacgacgctttgactaggttgcgagtcaagccaaatcaaacaccca 340  Q
    ||||||||| ||||||||||| || ||||||||||||||| |||  |||||| |||||||||||    
T  18300125 gcttccaaagctcaaaaacacaacactttgactaggttgcaagttgagccaactcaaacaccca 18300188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 4256446 - 4256408
Alignment:
Q  28 tgagttccatccacaatgagtcacgaatccaccaactga 66  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  4256446 tgagttccatcctcaatgagtcaagaatccaccaactga 4256408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 4490190 - 4490156
Alignment:
Q  28 tgagttccatccacaatgagtcacgaatccaccaa 62  Q
    ||||||||||||||||||||||| |||||||||||    
T  4490190 tgagttccatccacaatgagtcaagaatccaccaa 4490156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 4493252 - 4493286
Alignment:
Q  28 tgagttccatccacaatgagtcacgaatccaccaa 62  Q
    ||||||||||||||||||||||| |||||||||||    
T  4493252 tgagttccatccacaatgagtcaagaatccaccaa 4493286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 4557422 - 4557456
Alignment:
Q  28 tgagttccatccacaatgagtcacgaatccaccaa 62  Q
    ||||||||||||||||||||||| |||||||||||    
T  4557422 tgagttccatccacaatgagtcaagaatccaccaa 4557456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 4592528 - 4592562
Alignment:
Q  28 tgagttccatccacaatgagtcacgaatccaccaa 62  Q
    ||||||||||||||||||||||| |||||||||||    
T  4592528 tgagttccatccacaatgagtcaagaatccaccaa 4592562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 11050275 - 11050229
Alignment:
Q  5 ccttcacaaatagcttccaatactgagttccatccacaatgagtcac 51  Q
    |||||| ||||||||||||| || |||||||||||||||||| ||||    
T  11050275 ccttcataaatagcttccaacacggagttccatccacaatgaatcac 11050229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 4516619 - 4516656
Alignment:
Q  29 gagttccatccacaatgagtcacgaatccaccaactga 66  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  4516619 gagttccatccacaatgagtcaagaatcctccaactga 4516656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 3086717 - 3086751
Alignment:
Q  28 tgagttccatccacaatgagtcacgaatccaccaa 62  Q
    ||||||||||||||||||||||| |||||||||||    
T  3086717 tgagttccatccacaatgagtcaagaatccaccaa 3086751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 3519 - 3483
Alignment:
Q  28 tgagttccatccacaatgagtcacgaatccaccaact 64  Q
    ||||||||||||||||||||| | |||||||||||||    
T  3519 tgagttccatccacaatgagttaagaatccaccaact 3483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 24462263 - 24462307
Alignment:
Q  19 ttccaatactgagttccatccacaatgagtcacgaatccaccaac 63  Q
    |||||| |||||||||||||||||||||||||  ||| |||||||    
T  24462263 ttccaacactgagttccatccacaatgagtcaaaaatgcaccaac 24462307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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