View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10639_low_13 (Length: 383)

Name: NF10639_low_13
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10639_low_13
NF10639_low_13
[»] chr3 (6 HSPs)
chr3 (1-367)||(20304758-20305124)
chr3 (1-351)||(27539945-27540295)
chr3 (1-174)||(25808562-25808736)
chr3 (20-197)||(2290348-2290525)
chr3 (4-87)||(14243096-14243179)
chr3 (103-196)||(3572707-3572800)
[»] scaffold0741 (1 HSPs)
scaffold0741 (1-367)||(5340-5706)
[»] chr5 (3 HSPs)
chr5 (1-367)||(37635485-37635851)
chr5 (106-196)||(25801963-25802053)
chr5 (22-83)||(21346124-21346185)
[»] chr7 (2 HSPs)
chr7 (1-364)||(26176482-26176845)
chr7 (130-196)||(6671506-6671572)
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-367)||(41324-41690)
[»] chr6 (1 HSPs)
chr6 (1-352)||(7653951-7654297)
[»] chr4 (2 HSPs)
chr4 (1-159)||(16599892-16600050)
chr4 (261-348)||(16599801-16599888)
[»] chr1 (3 HSPs)
chr1 (2-196)||(15200507-15200703)
chr1 (4-163)||(15219524-15219683)
chr1 (21-196)||(159933-160108)
[»] chr2 (3 HSPs)
chr2 (1-174)||(12398258-12398431)
chr2 (28-158)||(29803748-29803878)
chr2 (103-196)||(18856338-18856431)
[»] chr8 (1 HSPs)
chr8 (20-196)||(25819461-25819637)
[»] scaffold0073 (1 HSPs)
scaffold0073 (106-196)||(41418-41508)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 20305124 - 20304758
Alignment:
Q  1 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20305124 ttgtttggacactacgcgagaattctagttgatatggattcctcccgtaagatttttcatgaaattgttgttgagagggaatgatatgctttcccggttg 20305025  T
Q  101 ccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaatcac 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20305024 tcgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatccaagaaaggaaatcac 20304925  T
Q  201 aaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaacccttcaggg 300  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  20304924 aaaggacataacaactgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggactaacaacccttcaggg 20304825  T
Q  301 atcggttcttcaagagcatttggcgcaacacatgacactaattcagcaccggttcttatagaaaagg 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20304824 atcggttcttcaagagcatttggcgcaacacatgacactaattcagcaccgattcttatagaaaagg 20304758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 27540295 - 27539945
Alignment:
Q  1 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 100  Q
    ||||||| ||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27540295 ttgtttgaacattatgcgagaatactagttgatatggatttctcctgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 27540196  T
Q  101 ccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaatcac 200  Q
     |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||||||||||||| || |||    
T  27540195 tcgtggcctatgaatggatgcccgatttttgttctcactgtcagaatatcgggcatgacgtcaccgtctgtagaagattgtatcctagaaaggtaaacac 27540096  T
Q  201 aaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaacccttcaggg 300  Q
    |||||  | |||||||||||| ||| |||||  || ||| || |||||||||||| ||| ||||||||| || |||||||||||  |||||||||||| |    
T  27540095 aaaggtaacaacagctgccaaggaacaaatagcgcttggaaagaagcaagttcagacaaagaaagatacatggattccaaggaccgacaacccttcagag 27539996  T
Q  301 atcggttcttcaagagcatttggcgcaacacatgacactaattcagcaccg 351  Q
    | ||| |||||   ||| |||||| ||||| ||||||||| | ||||||||    
T  27539995 accggctcttccctagcttttggcacaacaaatgacactactccagcaccg 27539945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 25808736 - 25808562
Alignment:
Q  1 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagat-ttttcatgaaattgttgttgagagggaaggatatgctttcccggtt 99  Q
    ||||||||||| || || |||||||| |||||||||||||||||||||||| | ||||||||| |||||||| || |||||||| | ||| ||| |||||    
T  25808736 ttgtttggacattatgcaagaattcttgttgatatggatttctcccgtaagttattttcatgagattgttgtcgaaagggaagggtttgccttcacggtt 25808637  T
Q  100 gccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcaga 174  Q
    || ||||||||||||||| || | || || |||||||| ||||||||||| || || ||||||||||||||||||    
T  25808636 gcggtggcctatgaatggttgactgatttttgttctcattgtcagaatattggtcacgacgtcactgtctgcaga 25808562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 2290525 - 2290348
Alignment:
Q  20 gaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccgtggcctatgaatggat 119  Q
    ||||||||||||| ||||||||||| | |||| | |||||||||||  | || || |||||||| ||||| ||| |||| |  ||||| |||||||||||    
T  2290525 gaattctagttgacatggatttctcacataagttatttcatgaaatcatcgtcgaaagggaagggtatgccttcacggtggaggtggcttatgaatggat 2290426  T
Q  120 gcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaat 197  Q
    | | || | |||||| |||||||||||||| || ||||| |||||||  |||||||| || || |||| |||||||||    
T  2290425 gtctgattactgttcacactgtcagaatattggacatgatgtcactgcttgcagaaggctataccctataaaggaaat 2290348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 14243179 - 14243096
Alignment:
Q  4 tttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatat 87  Q
    ||||| |||||||| |||||||||||||||||||||||  | | |||| | |||||||||||||||||||| ||||||||||||    
T  14243179 tttggccactacgctagaattctagttgatatggattttgcacttaagctctttcatgaaattgttgttgaaagggaaggatat 14243096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 3572800 - 3572707
Alignment:
Q  103 gtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 196  Q
    ||||||||||||||| | || || ||||||||||| |||||||||||  | ||||| |||||||| |||||| | || |||||||| |||||||    
T  3572800 gtggcctatgaatggttaccggatttctgttctcattgtcagaatatatgtcatgatgtcactgtttgcagacggctttatcctaggaaggaaa 3572707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0741 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: scaffold0741
Description:

Target: scaffold0741; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 5340 - 5706
Alignment:
Q  1 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5340 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 5439  T
Q  101 ccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaatcac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5440 ccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcagccatgacgtcactgtctgcagaagactgtatcctagaaaggaaatcac 5539  T
Q  201 aaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaacccttcaggg 300  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||    
T  5540 aaaggacataacagctgccaaagaaaaaatagcgcatgggaaaaagcaagttcaggcaacgaaagatacttggattcgaaggactgacaacccttcaggg 5639  T
Q  301 atcggttcttcaagagcatttggcgcaacacatgacactaattcagcaccggttcttatagaaaagg 367  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||    
T  5640 atcggttcttcaagagcatttggtgcaacacatgacactaattcagcaccgatttttatagaaaagg 5706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 37635851 - 37635485
Alignment:
Q  1 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  37635851 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgttttcctggttg 37635752  T
Q  101 ccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaatcac 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635751 ccgtggcctatgaatggatgctcgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaatcac 37635652  T
Q  201 aaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaacccttcaggg 300  Q
    |||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||    
T  37635651 aaaggacataacagttgccaaagaaaaaataacgcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggactgacaacccttcaggg 37635552  T
Q  301 atcggttcttcaagagcatttggcgcaacacatgacactaattcagcaccggttcttatagaaaagg 367  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||||    
T  37635551 atcggttcttcaagagcatttggcgcaacacatggcactaattcaacaccgatttttatagaaaagg 37635485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 25801963 - 25802053
Alignment:
Q  106 gcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 196  Q
    |||||||||||| | || || ||||||||||||||||||||||| || ||||| |||||||  |||||| | || |||||||| |||||||    
T  25801963 gcctatgaatggttaccggatttctgttctcactgtcagaatataggtcatgatgtcactgcttgcagatggctttatcctaggaaggaaa 25802053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 21346185 - 21346124
Alignment:
Q  22 attctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaagg 83  Q
    ||||| ||||||||||||||||| || ||| | ||||||||||||| ||| || ||||||||    
T  21346185 attctggttgatatggatttctctcgcaagctctttcatgaaattgatgtcgaaagggaagg 21346124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 26176482 - 26176845
Alignment:
Q  1 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26176482 ttgtttggacactacgcgagaattctagttgatatggatttcacccgtaagatttttcatgaaattgttgttgacagggaaggatatgctttcccggttg 26176581  T
Q  101 ccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaatcac 200  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26176582 tcgtggcctatgaatggattcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaatcac 26176681  T
Q  201 aaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaacccttcaggg 300  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||  ||||||||||| |||| ||||||| | ||||||||||||    
T  26176682 aaaggacataacagctgccaaagaaataatagcgcatgggaaaaagcaagttcaggcaacaaaagatacttggattcgaaggactgaaaacccttcaggg 26176781  T
Q  301 atcggttcttcaagagcatttggcgcaacacatgacactaattcagcaccggttcttatagaaa 364  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  26176782 atcggttcttcaagagcatttggcgcaacacatgacactacttcagcaccgggtcttatagaaa 26176845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 6671572 - 6671506
Alignment:
Q  130 tgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 196  Q
    |||||||||||||||||||| || ||||| |||||||  |||||| | || |||||||| |||||||    
T  6671572 tgttctcactgtcagaatataggtcatgatgtcactgcttgcagatggctttatcctaggaaggaaa 6671506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 41324 - 41690
Alignment:
Q  1 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41324 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 41423  T
Q  101 ccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaatcac 200  Q
     ||||| |||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  41424 tcgtggtctatgaatggatgcccaacttctgctctcactgtcagaatatcgtccatgacgtcactgtctgcaaaagactgtatcctagaaaggaaatcac 41523  T
Q  201 aaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaacccttcaggg 300  Q
     ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||||||||||||    
T  41524 gaaggacataacagctgccaaagaaaaaatagtgcatgggaaaaagcaagttcaggcaacgaaagatacttggattccaaggattgacaacccttcaggg 41623  T
Q  301 atcggttcttcaagagcatttggcgcaacacatgacactaattcagcaccggttcttatagaaaagg 367  Q
    |||||||||||||||||||||||||||||| || |||||| |||| |||||||||||||||||||||    
T  41624 atcggttcttcaagagcatttggcgcaacagatcacactacttcaacaccggttcttatagaaaagg 41690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 7653951 - 7654297
Alignment:
Q  1 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 100  Q
    ||||||||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     ||||||||||||    
T  7653951 ttgtttggacattatgtgagaatactagttgatatggatttctcccgtaagatttttcatgaaattgttggtgagagggaagg-----ctttcccggttg 7654045  T
Q  101 ccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaatcac 200  Q
    |||||||||||||||||||||| || ||||||| |||||||||||||||||| |||||| |||| || || |||||| ||||||||||||||| || |||    
T  7654046 ccgtggcctatgaatggatgccggatttctgttgtcactgtcagaatatcgggcatgacatcaccgtatgtagaagattgtatcctagaaaggtaaacac 7654145  T
Q  201 aaaggacataacagctgccaaagaaaaaatatggcatgggaaaaagcaagttcaggcaatgaaagatacttgaattccaaggactaacaacccttcaggg 300  Q
    |||||  | |||||||||||| ||| |||||  || ||| || ||||||||| || ||| ||||||||| || |||||||||||| ||||||||||||||    
T  7654146 aaaggtaacaacagctgccaaggaacaaatagcgcttggaaagaagcaagtttagacaaagaaagatacatggattccaaggactgacaacccttcaggg 7654245  T
Q  301 atcggttcttcaagagcatttggcgcaacacatgacactaattcagcaccgg 352  Q
    ||||  |||||    || |||||||||||| ||||||||| |||||||||||    
T  7654246 atcgactcttccctggcttttggcgcaacaaatgacactacttcagcaccgg 7654297  T

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Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 16600050 - 16599892
Alignment:
Q  1 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 100  Q
    ||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16600050 ttgtttggacattatgcgagagtactagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 16599951  T
Q  101 ccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgac 159  Q
    |||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||||    
T  16599950 ccgtggcctatgaatggatgccggatttctattctcactgtcagaatatcgggcatgac 16599892  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 348
Target Start/End: Complemental strand, 16599888 - 16599801
Alignment:
Q  261 gaaagatacttgaattccaaggactaacaacccttcagggatcggttcttcaagagcatttggcgcaacacatgacactaattcagca 348  Q
    ||||||||| || |||||||||||| |||| |||||||||||||| |||||   ||| |||||||||||| ||||||||| |||||||    
T  16599888 gaaagatacatggattccaaggactgacaagccttcagggatcggctcttccctagcttttggcgcaacaaatgacactacttcagca 16599801  T

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Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 15200703 - 15200507
Alignment:
Q  2 tgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgc 101  Q
    ||||| |||| || || ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  ||      
T  15200703 tgtttagacattatgcaagaattctagtcgatatggacttctcccgtaagatttttcacgaaattgttgtcgagagggaaggatatgctttcccaatttt 15200604  T
Q  102 cgtggcctatgaatggatgcccgacttctgttctcactgtcaga--atatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 196  Q
     ||||||||  ||||||||||||| ||||||||||||||| |||  ||||||| ||||| |||| ||||||||||||| |||| |||||||||||||    
T  15200603 tgtggcctacaaatggatgcccgatttctgttctcactgtaagatcatatcgggcatgatgtcattgtctgcagaagattgtaccctagaaaggaaa 15200507  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 15219683 - 15219524
Alignment:
Q  4 tttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccg 103  Q
    |||||||| || || ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||   |    
T  15219683 tttggacattatgcaagaattctagtcgatatggacttctcccgtaagatttttcatgaaattgttgtcgagagggaaggatatgctttcccgatttttg 15219584  T
Q  104 tggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtca 163  Q
    |||||||  ||||||||||||| ||||||||||||||| |||||||||| ||||| ||||    
T  15219583 tggcctacaaatggatgcccgatttctgttctcactgtaagaatatcgggcatgatgtca 15219524  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 160108 - 159933
Alignment:
Q  21 aattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccgtggcctatgaatggatg 120  Q
    |||||| ||||||||||||||||| || |||   ||||||||||||| ||| || |||||||| | | | ||  | || |  ||||||||||||||| |     
T  160108 aattctggttgatatggatttctctcgcaagcgctttcatgaaattgatgtcgaaagggaagggtgttcctttacagtcgaagtggcctatgaatggtta 160009  T
Q  121 cccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 196  Q
    || || ||||||||||||| ||||||||| || ||||| ||||||   |||||| | || |||||||| |||||||    
T  160008 ccggatttctgttctcactttcagaatataggtcatgatgtcactacttgcagacggctttatcctaggaaggaaa 159933  T

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Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 12398431 - 12398258
Alignment:
Q  1 ttgtttggacactacgcgagaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttg 100  Q
    ||||||||||| || || |||||||| |||||||||||||||||||||||| | |||||||||||||||||||| | |||||| | ||| ||| ||||||    
T  12398431 ttgtttggacattatgcaagaattcttgttgatatggatttctcccgtaagttatttcatgaaattgttgttgaaaaggaagggtttgccttcacggttg 12398332  T
Q  101 ccgtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcaga 174  Q
    | ||||||||||||||| |||| || ||||||||||| ||| ||||||| || || |||||||| |||||||||    
T  12398331 cggtggcctatgaatggttgcctgatttctgttctcattgttagaatattggtcacgacgtcacggtctgcaga 12398258  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 29803748 - 29803878
Alignment:
Q  28 gttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccgtggcctatgaatggatgcccgact 127  Q
    ||||||||||||||||| || ||  | ||||| |||||||| || || |||||||| ||||| || | |||  | ||||||||||||||| | || || |    
T  29803748 gttgatatggatttctctcgcaaactctttcacgaaattgtggtcgaaagggaagggtatgcctttctggtgacggtggcctatgaatggttaccagatt 29803847  T
Q  128 tctgttctcactgtcagaatatcggccatga 158  Q
    |||||||||||||||||||||| || |||||    
T  29803848 tctgttctcactgtcagaatatagggcatga 29803878  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 18856338 - 18856431
Alignment:
Q  103 gtggcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 196  Q
    ||||||||||||||| | || || ||||||||||||||||||||||| || ||||| |||||||  |||||| |  | |||||||| |||||||    
T  18856338 gtggcctatgaatggttaccggatttctgttctcactgtcagaatataggtcatgatgtcactgcttgcagacggatttatcctaggaaggaaa 18856431  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 25819461 - 25819637
Alignment:
Q  20 gaattctagttgatatggatttctcccgtaagatttttcatgaaattgttgttgagagggaaggatatgctttcccggttgccgtggcctatgaatggat 119  Q
    |||||||||| || ||||||||||| ||||| || |||||||||||  | ||||| |||||| | ||||| ||| || | |  ||||| |||||||||||    
T  25819461 gaattctagtcgacatggatttctctcgtaaaatatttcatgaaatcatcgttgaaagggaatggtatgccttcacgttggaggtggcttatgaatggat 25819560  T
Q  120 gcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 196  Q
    ||| || || ||||| || ||||||||||| || ||||| |||| ||  |||||| |||| |||||  |||||||||    
T  25819561 gcctgatttttgttcacattgtcagaatattggacatgatgtcattgcttgcagacgactatatccccgaaaggaaa 25819637  T

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Target: scaffold0073 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 41508 - 41418
Alignment:
Q  106 gcctatgaatggatgcccgacttctgttctcactgtcagaatatcggccatgacgtcactgtctgcagaagactgtatcctagaaaggaaa 196  Q
    |||||||||||| | || || ||||||||||||||||||||||| || ||||| |||||||  |||||| | || |||||||| |||||||    
T  41508 gcctatgaatggttaccggatttctgttctcactgtcagaatataggtcatgatgtcactgcttgcagatggctttatcctaggaaggaaa 41418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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