View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10639_low_14 (Length: 373)

Name: NF10639_low_14
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10639_low_14
NF10639_low_14
[»] chr6 (15 HSPs)
chr6 (1-293)||(34598460-34598753)
chr6 (131-261)||(34625689-34625819)
chr6 (1-217)||(11539451-11539670)
chr6 (289-373)||(34625520-34625604)
chr6 (1-79)||(34754852-34754930)
chr6 (297-371)||(11539243-11539317)
chr6 (257-293)||(34625625-34625661)
chr6 (166-213)||(2820373-2820420)
chr6 (169-203)||(32577476-32577510)
chr6 (169-202)||(4945274-4945307)
chr6 (164-209)||(6294543-6294588)
chr6 (187-216)||(15109596-15109625)
chr6 (289-322)||(34598406-34598439)
chr6 (170-218)||(4859126-4859174)
chr6 (164-204)||(19138821-19138861)
[»] chr5 (8 HSPs)
chr5 (171-218)||(9878046-9878093)
chr5 (164-206)||(28322251-28322293)
chr5 (167-221)||(12241053-12241107)
chr5 (164-216)||(9895147-9895199)
chr5 (164-208)||(11601685-11601729)
chr5 (165-197)||(12969538-12969570)
chr5 (169-224)||(18542222-18542278)
chr5 (190-218)||(39424639-39424667)
[»] chr4 (8 HSPs)
chr4 (163-233)||(2796529-2796599)
chr4 (169-218)||(47040243-47040292)
chr4 (172-216)||(32369927-32369971)
chr4 (167-214)||(31277034-31277081)
chr4 (171-217)||(35212741-35212787)
chr4 (153-208)||(39598791-39598845)
chr4 (163-209)||(20119952-20119998)
chr4 (176-208)||(24379833-24379865)
[»] chr7 (2 HSPs)
chr7 (169-234)||(28266456-28266521)
chr7 (170-206)||(40826525-40826561)
[»] chr3 (3 HSPs)
chr3 (169-208)||(49636838-49636877)
chr3 (169-209)||(18268017-18268057)
chr3 (167-218)||(45289826-45289878)
[»] chr8 (7 HSPs)
chr8 (175-215)||(10170404-10170444)
chr8 (163-206)||(43806202-43806245)
chr8 (175-208)||(2517115-2517148)
chr8 (171-208)||(25799156-25799193)
chr8 (168-208)||(1979420-1979460)
chr8 (163-227)||(6252499-6252563)
chr8 (257-293)||(24362323-24362359)
[»] chr2 (5 HSPs)
chr2 (163-215)||(14667657-14667709)
chr2 (169-207)||(17427321-17427359)
chr2 (171-216)||(26787812-26787857)
chr2 (169-206)||(35198243-35198280)
chr2 (182-215)||(42205860-42205893)
[»] chr1 (6 HSPs)
chr1 (164-216)||(47126266-47126318)
chr1 (171-217)||(17080895-17080941)
chr1 (162-208)||(48317605-48317651)
chr1 (164-209)||(3451862-3451907)
chr1 (169-218)||(26462657-26462706)
chr1 (170-206)||(1118409-1118445)


Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 34598753 - 34598460
Alignment:
Q  1 agggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgagatgtataatcaaaagtattacattacatg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34598753 agggaaaacatccatactgctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgagatgtataatcaaaagtattacattacatg 34598654  T
Q  101 tagcacggacagttcttgaggaagacgtgtccgatatcctgatgttggacaacgacacgacataacatatgtgattacatccaattaattcattttctca 200  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34598653 tagcaccgacagttcttgaggaagacgtgtctgatatcctgatgttggacaacgacacgacataacatatgtgattacatccaattaattcattttctca 34598554  T
Q  201 aattattattggtgtc-gaggtatcaatttcatgtttggtgtccatgcttcatagttttcaattaattcattttttcaaactattacttgtgtc 293  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34598553 aattattatcggtgtcagaggtatcaatttcatgtttggtgtccatgcttcatagttttcaattaattcattttttcaaactattacttgtgtc 34598460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 34625819 - 34625689
Alignment:
Q  131 ccgatatcctgatgttggacaacgacacgacataacatatgtgattacatccaattaattcattttctcaaattattattggtgtcgaggtatcaatttc 230  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||    
T  34625819 ccgatatcctgttgttggacaacgacacgacataacatatgtgattacattcaattaattcattttctcaaattattatcggtgtcgatgtatcaatttc 34625720  T
Q  231 atgtttggtgtccatgcttcatagttttcaa 261  Q
    |||||||||||||||||||||||||||||||    
T  34625719 atgtttggtgtccatgcttcatagttttcaa 34625689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 11539670 - 11539451
Alignment:
Q  1 agggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgagatgtataatcaaaagtattacattacatg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |  ||||||||    
T  11539670 agggaaaacatccatactgctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgtgatgtataatcaaaattactggattacatg 11539571  T
Q  101 tagcacggacagttcttgaggaagacgtgtccgata---tcctgatgttggacaacgacacgacataacatatgtgattacatccaattaattcattttc 197  Q
    |||||| ||||  ||||| ||||||||| |||||||   | | ||| |   ||||||||| ||||| |||||||||||| |||||| |||||  | ||||    
T  11539570 tagcaccgacacatcttgtggaagacgtatccgatacgtttcagatatccaacaacgacatgacatcacatatgtgatttcatccacttaatatactttc 11539471  T
Q  198 tcaaattattattggtgtcg 217  Q
     |||||||||||||||||||    
T  11539470 acaaattattattggtgtcg 11539451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 34625604 - 34625520
Alignment:
Q  289 gtgtcggtggtgcttcatagtatccaagatcacattatttactagctagtatagaacctaccatagggtaccttatgactgtaac 373  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34625604 gtgttggtggtgcttcatagtatccaagatcacattatttactagctagtatagaacctaccatagggtaccttatgtctgtaac 34625520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 34754930 - 34754852
Alignment:
Q  1 agggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaattgagatgtataa 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  34754930 agggaaaacatccatacagctagaagtgaaaagttgagaatgataattataagggaaagaataaaactgtgatgtataa 34754852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 11539317 - 11539243
Alignment:
Q  297 ggtgcttcatagtatccaagatcacattatttactagctagtatagaacctaccatagggtaccttatgactgta 371  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  11539317 ggtgcttcatagtagtcaagatcacattatttacttgctagtatagaaccaaccatagggtaccttatgtctgta 11539243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 34625661 - 34625625
Alignment:
Q  257 ttcaattaattcattttttcaaactattacttgtgtc 293  Q
    |||||||||||||||||||||||||||||||||||||    
T  34625661 ttcaattaattcattttttcaaactattacttgtgtc 34625625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 2820373 - 2820420
Alignment:
Q  166 catatgtgattacatccaattaattcattttctcaaattattattggt 213  Q
    ||||||||||||||| || ||| || ||||||||||||||||||||||    
T  2820373 catatgtgattacattcatttattttattttctcaaattattattggt 2820420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 32577476 - 32577510
Alignment:
Q  169 atgtgattacatccaattaattcattttctcaaat 203  Q
    |||||||||||| ||||||||||||||||||||||    
T  32577476 atgtgattacattcaattaattcattttctcaaat 32577510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 4945307 - 4945274
Alignment:
Q  169 atgtgattacatccaattaattcattttctcaaa 202  Q
    |||||||||||| |||||||||||||||||||||    
T  4945307 atgtgattacattcaattaattcattttctcaaa 4945274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 6294543 - 6294588
Alignment:
Q  164 aacatatgtgattacatccaattaattcattttctcaaattattat 209  Q
    |||| ||| |||| ||| ||||||||||||||||||||||||||||    
T  6294543 aacacatgcgattgcattcaattaattcattttctcaaattattat 6294588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 216
Target Start/End: Original strand, 15109596 - 15109625
Alignment:
Q  187 aattcattttctcaaattattattggtgtc 216  Q
    ||||||||||||||||||||||||||||||    
T  15109596 aattcattttctcaaattattattggtgtc 15109625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 34598439 - 34598406
Alignment:
Q  289 gtgtcggtggtgcttcatagtatccaagatcaca 322  Q
    |||| |||||||||||||||||||||||||||||    
T  34598439 gtgtgggtggtgcttcatagtatccaagatcaca 34598406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 4859126 - 4859174
Alignment:
Q  170 tgtgattacatccaattaattcattttctcaaattattattggtgtcga 218  Q
    |||||||||||   ||||  |||||||||||||||||||||||||||||    
T  4859126 tgtgattacattggattatgtcattttctcaaattattattggtgtcga 4859174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 19138821 - 19138861
Alignment:
Q  164 aacatatgtgattacatccaattaattcattttctcaaatt 204  Q
    ||||||||||||||||| | ||||||||||| |||||||||    
T  19138821 aacatatgtgattacattcgattaattcattctctcaaatt 19138861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 9878046 - 9878093
Alignment:
Q  171 gtgattacatccaattaattcattttctcaaattattattggtgtcga 218  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  9878046 gtgattacattcaattaattcatattctcaaattattattggtgtcga 9878093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 28322293 - 28322251
Alignment:
Q  164 aacatatgtgattacatccaattaattcattttctcaaattat 206  Q
    |||| |||||||||||| |||||||||||||||||||||||||    
T  28322293 aacacatgtgattacattcaattaattcattttctcaaattat 28322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 12241107 - 12241053
Alignment:
Q  167 atatgtgattacatccaattaattcattttctcaaattattattggtgtcgaggt 221  Q
    ||||||| |||||| |||| | |||||| ||||||||||||| ||||||||||||    
T  12241107 atatgtggttacattcaataatttcattgtctcaaattattactggtgtcgaggt 12241053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 9895199 - 9895147
Alignment:
Q  164 aacatatgtgattacatccaattaattcattttctcaaattattattggtgtc 216  Q
    |||| |||||||||| | ||| ||||| ||||||||||||||||| |||||||    
T  9895199 aacacatgtgattacgttcaaataatttattttctcaaattattactggtgtc 9895147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 11601729 - 11601685
Alignment:
Q  164 aacatatgtgattacatccaattaattcattttctcaaattatta 208  Q
    ||||||||||||||||| ||||||||| | ||||| |||||||||    
T  11601729 aacatatgtgattacattcaattaatttagtttcttaaattatta 11601685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 12969570 - 12969538
Alignment:
Q  165 acatatgtgattacatccaattaattcattttc 197  Q
    |||||||||||||||| ||||||||||||||||    
T  12969570 acatatgtgattacattcaattaattcattttc 12969538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 18542222 - 18542278
Alignment:
Q  169 atgtgattacatccaattaattc-attttctcaaattattattggtgtcgaggtatc 224  Q
    |||||||||||| |||||| ||  ||||||||||||||||| ||||||||| |||||    
T  18542222 atgtgattacattcaattacttgtattttctcaaattattactggtgtcgatgtatc 18542278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 218
Target Start/End: Complemental strand, 39424667 - 39424639
Alignment:
Q  190 tcattttctcaaattattattggtgtcga 218  Q
    |||||||||||||||||||||||||||||    
T  39424667 tcattttctcaaattattattggtgtcga 39424639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 2796599 - 2796529
Alignment:
Q  163 taacatatgtgattacatccaattaattcattttctcaaattattattggtgtcgaggtatcaatttcatg 233  Q
    ||||| ||||||||| || ||||||||||||||||||||||||||| |||||| || || ||||| |||||    
T  2796599 taacacatgtgattaaattcaattaattcattttctcaaattattaatggtgttgaagtgtcaatgtcatg 2796529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 47040243 - 47040292
Alignment:
Q  169 atgtgattacatccaattaattcattttctcaaattattattggtgtcga 218  Q
    ||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  47040243 atgtgattatatccagttaattcattttctcaaattatcattggtgtcga 47040292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 32369927 - 32369971
Alignment:
Q  172 tgattacatccaattaattcattttctcaaattattattggtgtc 216  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||    
T  32369927 tgattacattcaattaattcattttctcaaattattatcggtgtc 32369971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 31277034 - 31277081
Alignment:
Q  167 atatgtgattacatccaattaattcattttctcaaattattattggtg 214  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  31277034 atatgtgattacattcaattagttcattttctcaaattattatcggtg 31277081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 35212741 - 35212787
Alignment:
Q  171 gtgattacatccaattaattcattttctcaaattattattggtgtcg 217  Q
    |||||||||| |||||| || ||||||||||||||||||||||||||    
T  35212741 gtgattacattcaattatttaattttctcaaattattattggtgtcg 35212787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 39598791 - 39598845
Alignment:
Q  153 cgacacgacataacatatgtgattacatccaattaattcattttctcaaattatta 208  Q
    |||||||||| |||| |||||||||||| |||||||||||||||| ||||| ||||    
T  39598791 cgacacgacacaaca-atgtgattacattcaattaattcattttcgcaaatcatta 39598845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 20119998 - 20119952
Alignment:
Q  163 taacatatgtgattacatccaattaattcattttctcaaattattat 209  Q
    ||||| ||||||||||||  ||||| |||||||||||||||||||||    
T  20119998 taacacatgtgattacattaaattatttcattttctcaaattattat 20119952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 24379865 - 24379833
Alignment:
Q  176 tacatccaattaattcattttctcaaattatta 208  Q
    ||||||||||||||||||||||||| |||||||    
T  24379865 tacatccaattaattcattttctcagattatta 24379833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 28266521 - 28266456
Alignment:
Q  169 atgtgattacatccaattaattcattttctcaaattattattggtgtcgaggtatcaatttcatgt 234  Q
    ||||| |||||||||||||||| |||||||||||||||||  |||||||| ||||| || ||||||    
T  28266521 atgtgtttacatccaattaatttattttctcaaattattaccggtgtcgatgtatctatgtcatgt 28266456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 40826561 - 40826525
Alignment:
Q  170 tgtgattacatccaattaattcattttctcaaattat 206  Q
    |||||||| || |||||||||||||||||||||||||    
T  40826561 tgtgattatattcaattaattcattttctcaaattat 40826525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 49636838 - 49636877
Alignment:
Q  169 atgtgattacatccaattaattcattttctcaaattatta 208  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  49636838 atgtgattacattcaattaattcattttctcaaattatta 49636877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 18268017 - 18268057
Alignment:
Q  169 atgtgattacatccaattaattcattttctcaaattattat 209  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  18268017 atgtgattacgttcaattaattcattttctcaaattattat 18268057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 45289878 - 45289826
Alignment:
Q  167 atatgtgattacatccaattaattcatttt-ctcaaattattattggtgtcga 218  Q
    |||||||||||||| ||||||  ||||||| ||||||||||||||| ||||||    
T  45289878 atatgtgattacattcaattatatcatttttctcaaattattattgttgtcga 45289826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 10170404 - 10170444
Alignment:
Q  175 ttacatccaattaattcattttctcaaattattattggtgt 215  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  10170404 ttacattcaattaatttattttctcaaattattattggtgt 10170444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 43806202 - 43806245
Alignment:
Q  163 taacatatgtgattacatccaattaattcattttctcaaattat 206  Q
    ||||||||||||||| || ||||||||||||||||| |||||||    
T  43806202 taacatatgtgattatattcaattaattcattttcttaaattat 43806245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 2517148 - 2517115
Alignment:
Q  175 ttacatccaattaattcattttctcaaattatta 208  Q
    |||||| |||||||||||||||||||||||||||    
T  2517148 ttacattcaattaattcattttctcaaattatta 2517115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 25799193 - 25799156
Alignment:
Q  171 gtgattacatccaattaattcattttctcaaattatta 208  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  25799193 gtgatcacattcaattaattcattttctcaaattatta 25799156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 1979460 - 1979420
Alignment:
Q  168 tatgtgattacatccaattaattcattttctcaaattatta 208  Q
    |||||||||||||  |||||||| |||||||||||||||||    
T  1979460 tatgtgattacatttaattaattaattttctcaaattatta 1979420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 6252499 - 6252563
Alignment:
Q  163 taacatatgtgattacatccaattaattcattttctcaaattattattggtgtcgaggtatcaat 227  Q
    ||||| ||||||||||||  |||||| | ||||||||||||||||||  | ||||| ||||||||    
T  6252499 taacaaatgtgattacatttaattaaattattttctcaaattattatcagcgtcgacgtatcaat 6252563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 24362359 - 24362323
Alignment:
Q  257 ttcaattaattcattttttcaaactattacttgtgtc 293  Q
    ||||||||||||||||||||||| | |||||||||||    
T  24362359 ttcaattaattcattttttcaaatttttacttgtgtc 24362323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 14667709 - 14667657
Alignment:
Q  163 taacatatgtgattacatccaattaattcattttctcaaattattattggtgt 215  Q
    ||||||||||||||| || |||||| |||||||||||||||||| || |||||    
T  14667709 taacatatgtgattatattcaattagttcattttctcaaattataataggtgt 14667657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 17427321 - 17427359
Alignment:
Q  169 atgtgattacatccaattaattcattttctcaaattatt 207  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  17427321 atgtgattaccttcaattaattcattttctcaaattatt 17427359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 26787812 - 26787857
Alignment:
Q  171 gtgattacatccaattaattcattttctcaaattattattggtgtc 216  Q
    ||||||||||| |||||  ||||||||||||||| |||||||||||    
T  26787812 gtgattacatcgaattatgtcattttctcaaatttttattggtgtc 26787857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 35198243 - 35198280
Alignment:
Q  169 atgtgattacatccaattaattcattttctcaaattat 206  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  35198243 atgtgattacattcaattaattcattttcttaaattat 35198280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 42205860 - 42205893
Alignment:
Q  182 caattaattcattttctcaaattattattggtgt 215  Q
    ||||||| ||||||||||||||||||||||||||    
T  42205860 caattaagtcattttctcaaattattattggtgt 42205893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 47126318 - 47126266
Alignment:
Q  164 aacatatgtgattacatccaattaattcattttctcaaattattattggtgtc 216  Q
    ||||||||||  ||||| |||||| |||||||||| |||||||||||||||||    
T  47126318 aacatatgtgggtacattcaattatttcattttcttaaattattattggtgtc 47126266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 17080895 - 17080941
Alignment:
Q  171 gtgattacatccaattaattcattttctcaaattattattggtgtcg 217  Q
    |||||||||| ||||||  | ||||||||||||||||||||||||||    
T  17080895 gtgattacattcaattatgttattttctcaaattattattggtgtcg 17080941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 48317651 - 48317605
Alignment:
Q  162 ataacatatgtgattacatccaattaattcattttctcaaattatta 208  Q
    |||| |||||| ||||||| |||||| ||||||||||||||||||||    
T  48317651 ataatatatgttattacattcaattatttcattttctcaaattatta 48317605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 3451907 - 3451862
Alignment:
Q  164 aacatatgtgattacatccaattaattcattttctcaaattattat 209  Q
    |||| ||||||||| || |||||||||| |||||||||||||||||    
T  3451907 aacacatgtgattaaattcaattaattcgttttctcaaattattat 3451862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 26462657 - 26462706
Alignment:
Q  169 atgtgattacatccaattaattcattttctcaaattattattggtgtcga 218  Q
    |||||||||||| |||||| |||||||||| ||||||||||  |||||||    
T  26462657 atgtgattacattcaattatttcattttcttaaattattatcagtgtcga 26462706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 1118409 - 1118445
Alignment:
Q  170 tgtgattacatccaattaattcattttctcaaattat 206  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  1118409 tgtgattacattcaattaattcattttttcaaattat 1118445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University