View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10639_low_15 (Length: 368)
Name: NF10639_low_15
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 207 - 358
Target Start/End: Original strand, 38613476 - 38613627
Alignment:
| Q |
207 |
taattcttactaaatatttcacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38613476 |
taattcttactaaatattccacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac |
38613575 |
T |
|
| Q |
307 |
ttttatttatttttctatctcgtagcaagtttggccatcatcatcatctctg |
358 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
38613576 |
ttttatttatttttctatctcgtaacaagtttggccatcatcatcttctctg |
38613627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 38612088 - 38612218
Alignment:
| Q |
85 |
acgcccttacatttgcacctcacttttaaattacaatgcccaacaccttcgctcattcttctggtgccgttattattggtgttatctcttgtatttttcc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38612088 |
acgcccttacatttgcacctcacttttaaattacaatgcccaacaccttcgctcattcttctggtgccgttattattggtgttatctcttgtattttttc |
38612187 |
T |
|
| Q |
185 |
tgtttagaaaatgatctgatgttaattctta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38612188 |
tgtttagaaaatgatctgatgttaattctta |
38612218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38612004 - 38612044
Alignment:
| Q |
1 |
tttcaaactaatatatgtgtttttgcaataccatgtaagtg |
41 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38612004 |
tttcaaactaatatatgtgtttttgcaataccatgtaagtg |
38612044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 14667244 - 14667294
Alignment:
| Q |
111 |
taaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
161 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| | |||||||||| |
|
|
| T |
14667244 |
taaattacaatgcctaacacctttcctcattcttctggcggcgttattatt |
14667294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 1012494 - 1012544
Alignment:
| Q |
111 |
taaattacaatgcccaacaccttcgctcattcttctggtgccgttattatt |
161 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| | |||||||||| |
|
|
| T |
1012494 |
taaattacaatgcctaacacctttcctcattcttctggcggcgttattatt |
1012544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University