View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_17 (Length: 358)
Name: NF10639_low_17
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 8564728 - 8564405
Alignment:
| Q |
17 |
cacagacccaaaagcctgtaaaccaggctccaaaccttgtagcttcattctcttgagaagcaacaaaacttcacataaatccccaatctgagcatatgca |
116 |
Q |
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| T |
8564728 |
cacagacccaaaagcctgtaaaccaggctccaaaccttgtagcttcattctcttgagaagcaacaaaacttcacataaatccccaatctgagcatatgca |
8564629 |
T |
|
| Q |
117 |
gataacaaagaattccacgaaacaacatctctttgatccataaattcaaacaatttcctacaatcttcaatacttccacatttcccgtacaaattcacca |
216 |
Q |
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| T |
8564628 |
gataacaaagaattccacgaaacaacatctcttcgatccataaattcaaacaatttcctacaatcttcaatacttccacatttcccgtacaaattcacca |
8564529 |
T |
|
| Q |
217 |
tagaatttaacaaattcaaatctgacataaacccataaaaaattgcacaaccatgcaaacactgcacataagaaacctccgaaactccaaacaacaaact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8564528 |
tagaatttaacaaattcaaatctgacataaacccataaaaaattgcacaaccatgcaaacactgcacataaggaacctccgaaactccaaacaacaaact |
8564429 |
T |
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| Q |
317 |
cagcaaagtaacactactcggttg |
340 |
Q |
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|||||||||||||||||||||||| |
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| T |
8564428 |
cagcaaagtaacactactcggttg |
8564405 |
T |
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