View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_18 (Length: 350)
Name: NF10639_low_18
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 38567865 - 38567540
Alignment:
| Q |
13 |
tcaaaatcaactatatttgataacatccaaacatatcaaattcatttctacacttctaaaattaattttgcctcagtccagtagtggaacgaaacataca |
112 |
Q |
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| T |
38567865 |
tcaaaatcaactatatttgataacatccaaacatatcaaattcatttctacacttctaaaattaattttgcctcagtccagtagtggaacgaaacataca |
38567766 |
T |
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| Q |
113 |
tgttgctttttattttcttgctgcttatgtgtggcagtgctatgataaacatgtagcctaatttccttcctcatgttgtgtgtattttcaggttgcttcc |
212 |
Q |
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| T |
38567765 |
tgttgctttttattttcttgctgcttatgtgtggcagtgctatgataaacatgtagcctaacttccttcctcgtgttgtgtgtattttcaggttgcttcc |
38567666 |
T |
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| Q |
213 |
tttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaatcaggagtttttgaaggttttatatctggagtaggtgtag |
312 |
Q |
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| T |
38567665 |
tttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaatcaggagtttttgaaggttttatatctggagtaggtgtag |
38567566 |
T |
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| Q |
313 |
gcacatttatgtttcttatgttccta |
338 |
Q |
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| T |
38567565 |
gcacatttatgtttcttatgttccta |
38567540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 188 - 331
Target Start/End: Complemental strand, 38526562 - 38526419
Alignment:
| Q |
188 |
ttgtgtgtattttcaggttgcttcctttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaatcaggagtttttgaa |
287 |
Q |
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| T |
38526562 |
ttgtgtatattttcaggttgcatcctttactggggaaaagcaagcagtatctagttatagcaaatttcttgtagatgcttacaaatcaggagtttttgaa |
38526463 |
T |
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| Q |
288 |
ggttttatatctggagtaggtgtaggcacatttatgtttcttat |
331 |
Q |
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| T |
38526462 |
ggtactatagctggagcaggactaggcacagttatgtttgttat |
38526419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 10859936 - 10860016
Alignment:
| Q |
34 |
aacatccaaacatatcaaattcatttctacacttctaaaattaattttgcctcagtccagtagtggaacgaaacatacatgt |
115 |
Q |
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| T |
10859936 |
aacattcaaacaggtcaaaatcatttctacacctctataatgaattttgcctc-ttccaaaagtggaaccaaacatacatgt |
10860016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 7263060 - 7262988
Alignment:
| Q |
15 |
aaaatcaactatatttgataacatccaaacatatcaaattcatttctacacttctaaaattaattttgcctca |
87 |
Q |
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|||||||| |||| | || ||||||| || || ||||| ||| ||||||||||||| ||| |||||||||||| |
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| T |
7263060 |
aaaatcaattatactcgagaacatcctaaaatgtcaaaatcaattctacacttctagaatcaattttgcctca |
7262988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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