View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_2 (Length: 543)
Name: NF10639_low_2
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 249 - 517
Target Start/End: Complemental strand, 16627884 - 16627616
Alignment:
| Q |
249 |
atgtagtaaaagtaacaatatacataaattttaaacaaaacgaggataataaaaaattcagttagtggaattcacaattcagctcagcttattttgttgc |
348 |
Q |
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| T |
16627884 |
atgtagtaaaagtaacaatatacataaattttaaacaaaacgaggataataaaaaattcagttagtggaattcacaattcagctcagcttattttgttgc |
16627785 |
T |
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| Q |
349 |
acataaaatcttgtcatagatccattttctgatgtgacatcatcgtctttgttttatgcatattaatttttgtcatgcaacttcctttgtctctttcaca |
448 |
Q |
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| T |
16627784 |
acataaaatcttgtcatagatccattttctgatgtgacatcatcgtctttgttttatgcatattaatttttgtcatgcaacttcctttgtctctttcaca |
16627685 |
T |
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| Q |
449 |
tttatttcttttgttattttcaccaaaatataataaatacgcaaaaatagaatgatatgatagaagtct |
517 |
Q |
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| T |
16627684 |
tttatttcttttattattttcacctaaatataataaatacgcaaaaatagaatgatatgacagaagtct |
16627616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 16628086 - 16627906
Alignment:
| Q |
22 |
atgtaatttattcaagtgtttacgatcttttattaaaagatataatattaaggttcggtatatgtatctttatatcaatgccattattgccatttgctat |
121 |
Q |
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| T |
16628086 |
atgtaatttattcaagtgtttactctcttttattaaaagatataatattaaggttcggtat--gtatctttatatcaatgccattattgtcatttgctat |
16627989 |
T |
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| Q |
122 |
gtcgtccacgtaccatgtgtgataaatggacacagtactggagttagattggaccacatgaacataataatttcatgcagctaa |
205 |
Q |
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| T |
16627988 |
gtcgtccacgtaccatgtgtgataaatggacacagtactgcagttagattggaccacatgaaca-aataatttcatgtagctaa |
16627906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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