View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_20 (Length: 328)
Name: NF10639_low_20
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 40861820 - 40861537
Alignment:
| Q |
18 |
agattatggttagtatagcttataggaatatagtggagttctagtttgatcatgcattcatgctagtatgtcgagttatgaaaaattatattagatcgct |
117 |
Q |
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| T |
40861820 |
agattatggttagtatagcttataggaatatagtggagttctagtttgatcatgcattcatgctagtatgtcgagttatgaaaaattatattaga--gct |
40861723 |
T |
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| Q |
118 |
gcannnnnnnn-agaagatattagagttgtgatatttaaacataaaattaattctatttatttatcccttatttttcatcttattgcaaaataaacgaaa |
216 |
Q |
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| T |
40861722 |
gcatttttttttagaagatattagagttatgatatttaaacataaaattaattctatttatttatcccttatttttcatcttattgcaaaataaacgaaa |
40861623 |
T |
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| Q |
217 |
ta--aaaaggtacactgtatttttatcaattttgtgtgaccgtttaata-----tttattttattatacatagataatattataca |
295 |
Q |
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| T |
40861622 |
taaaaaaaggtacactgtatttttatcaattttgtgtgaccgtttaatatttattttattttattatacatagataatgttataca |
40861537 |
T |
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