View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_21 (Length: 310)
Name: NF10639_low_21
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 50554392 - 50554684
Alignment:
| Q |
1 |
agtggttcatcggatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaaacgccaaagaaggtatttccgtc |
100 |
Q |
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| T |
50554392 |
agtggttcatcggatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaaacgccaaagaaggtatttccgtc |
50554491 |
T |
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| Q |
101 |
taactt----------------cttattatatgtggttttcaaattatgatataataatgattcatgacatggtttcaggaaggattctaattgcgagtc |
184 |
Q |
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| T |
50554492 |
taactttaaatacaacacttttcttattatatttggttttcaaattatgatataataatgattcatgacatggtttcaggaaggattctaattgcgagtc |
50554591 |
T |
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| Q |
185 |
agccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctcaggtaactagtcaatgttttggagcataatcttttgtgag |
277 |
Q |
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| T |
50554592 |
agccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctcaggtaactagtcaatgttttggagcataatcttttgtgag |
50554684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 260
Target Start/End: Original strand, 50816972 - 50817093
Alignment:
| Q |
139 |
ataatgattcatgacatggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctca |
238 |
Q |
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| T |
50816972 |
ataatgattcatgacatggtttcaggaaggtttcaaatcccaagtcagccaggagatcaaggcggagaaaacaagcgcatttgtttgaacttgagtctca |
50817071 |
T |
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| Q |
239 |
ggtaactagtcaatgttttgga |
260 |
Q |
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| T |
50817072 |
ggtaactaatcaatgttttgga |
50817093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 50858892 - 50858771
Alignment:
| Q |
139 |
ataatgattcatgacatggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctca |
238 |
Q |
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| T |
50858892 |
ataatgattcatgacatggtttcaggaaggtttcaaatcccaagtcagccaggagatcaaggcggagaaaacaagcgcatttgtttgaacttgagtctca |
50858793 |
T |
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| Q |
239 |
ggtaactagtcaatgttttgga |
260 |
Q |
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| T |
50858792 |
ggtaactaatcaatgttttgga |
50858771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 1131584 - 1131520
Alignment:
| Q |
13 |
gatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaa |
77 |
Q |
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| T |
1131584 |
gatccatctgatgaagatgatgaagcaggtccttgtgaacaaagtacaaaccctgttgatatgaa |
1131520 |
T |
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