View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10639_low_22 (Length: 306)

Name: NF10639_low_22
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10639_low_22
NF10639_low_22
[»] chr5 (8 HSPs)
chr5 (18-294)||(788210-788486)
chr5 (103-298)||(19215287-19215482)
chr5 (100-236)||(36868259-36868395)
chr5 (18-284)||(35811049-35811316)
chr5 (65-171)||(32278688-32278794)
chr5 (126-236)||(15188033-15188140)
chr5 (173-236)||(37307257-37307320)
chr5 (110-156)||(36150672-36150718)
[»] chr6 (4 HSPs)
chr6 (36-291)||(25167755-25168011)
chr6 (110-220)||(10990007-10990117)
chr6 (36-211)||(3949326-3949502)
chr6 (112-218)||(4263398-4263501)
[»] chr4 (6 HSPs)
chr4 (36-291)||(37049912-37050169)
chr4 (110-236)||(24239870-24239993)
chr4 (111-234)||(19852453-19852576)
chr4 (124-234)||(16593810-16593920)
chr4 (110-211)||(16832167-16832268)
chr4 (244-297)||(16832337-16832390)
[»] chr2 (7 HSPs)
chr2 (36-288)||(37344534-37344787)
chr2 (111-298)||(31092221-31092408)
chr2 (100-236)||(18811722-18811858)
chr2 (111-236)||(14296286-14296411)
chr2 (110-199)||(8413844-8413933)
chr2 (111-180)||(18693124-18693193)
chr2 (110-232)||(13502653-13502775)
[»] chr1 (9 HSPs)
chr1 (73-293)||(13061952-13062172)
chr1 (110-297)||(41035052-41035236)
chr1 (96-236)||(50903495-50903635)
chr1 (103-236)||(17114734-17114867)
chr1 (111-236)||(49491908-49492032)
chr1 (103-199)||(3374307-3374403)
chr1 (112-236)||(19394156-19394280)
chr1 (100-182)||(14344076-14344158)
chr1 (112-178)||(39332359-39332425)
[»] chr3 (7 HSPs)
chr3 (121-294)||(35526599-35526776)
chr3 (100-294)||(29346706-29346901)
chr3 (100-236)||(51524834-51524970)
chr3 (96-236)||(16893044-16893184)
chr3 (150-233)||(26796887-26796970)
chr3 (150-234)||(31067144-31067228)
chr3 (112-236)||(21844920-21845044)
[»] chr8 (9 HSPs)
chr8 (100-236)||(27786804-27786940)
chr8 (103-298)||(29369008-29369203)
chr8 (100-232)||(36206437-36206569)
chr8 (111-234)||(8831250-8831373)
chr8 (110-234)||(28225740-28225864)
chr8 (141-236)||(399778-399873)
chr8 (251-297)||(8831429-8831475)
chr8 (114-184)||(30646383-30646453)
chr8 (237-297)||(36206598-36206658)
[»] chr7 (3 HSPs)
chr7 (106-298)||(19407866-19408067)
chr7 (96-219)||(26449549-26449672)
chr7 (112-217)||(33191264-33191369)
[»] scaffold0531 (1 HSPs)
scaffold0531 (110-234)||(10228-10352)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 788210 - 788486
Alignment:
Q  18 aaaagactaccctatctgaaatttgaacaaaagtttggtattcctcgatattttgttgcaattgaaccgattcgtctatatatgtcaaggcggctttgga 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||||||||| |||  ||||||||||||||||||||||||||    
T  788210 aaaagactaccctctctgaaatttgaacaaaagtttggtattctccgatattctgttgcaattgaaccaattattctatatatgtcaaggcggctttgga 788309  T
Q  118 ggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgccttaatgctc 217  Q
    ||||||||||||||||| |||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  788310 ggaacccttttgggcacgagtcctcatagcgtctgagttaaagttagaaggcttcattttgttcatctgcttcttcttctttctctctgccttaatgctc 788409  T
Q  218 tcaaatagacttggatagtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctacttc 294  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  788410 tcaaatagacttggatagtcttctatttcaagcctcttgtcatggctgagagtgacctccatcacctcttctacttc 788486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 103 - 298
Target Start/End: Complemental strand, 19215482 - 19215287
Alignment:
Q  103 caaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctc 202  Q
    |||||| | |||| ||| |||||||||||| |  |||||||| | |||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||    
T  19215482 caaggcagttttgaaggtacccttttgggctcgggtcctcattcgggctgagttaaagctagacggcatcactttgttcacctgcttcttcttcattctc 19215383  T
Q  203 tctgccttaatgctctcaaatagacttggatagtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctacttcatct 298  Q
    |||| |||| ||||||||||||| |||||||||||||| ||||| |||||||| |||||||| | |||| ||||   || ||||||||||||||||    
T  19215382 tctgtcttagtgctctcaaataggcttggatagtcttccatctctagcctcttatcatggctaatagtgtcctctaacatctcttctacttcatct 19215287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 36868395 - 36868259
Alignment:
Q  100 tgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttcttt 199  Q
    ||||||||  ||||||||||||||||||||| |||  | |||||| |||||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  36868395 tgtcaaggtagctttggaggaacccttttggacacgggccctcattccggctgagttaaagctagaaggcttcactttattcacttgcttcttcttcttt 36868296  T
Q  200 ctctctgccttaatgctctcaaatagacttggatagt 236  Q
    |||||  ||||| |||||||| ||  |||||||||||    
T  36868295 ctctccaccttattgctctcagattaacttggatagt 36868259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 35811316 - 35811049
Alignment:
Q  18 aaaagactaccctatctgaaa-tttgaacaaaagt-ttggtattcctcgatattttgttgcaattgaaccgattcgtctatatatgtcaaggcggctttg 115  Q
    ||||||||||||| | ||||| ||||||||||||| ||||||||||   ||||| ||||||||||||||| | |  | ||||| |||||||||| |||||    
T  35811316 aaaagactaccctctatgaaaatttgaacaaaagtattggtattcccaaatattatgttgcaattgaaccaactattttatatttgtcaaggcg-ctttg 35811218  T
Q  116 gaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgccttaatgc 215  Q
    |    ||| |||||| ||| ||||||||| ||  |||| |||||| |||||  ||| ||||| |||| |||||||||||||| |||||||| |||| ||     
T  35811217 gtaataccattttggacacgagtcctcattccaactgaattaaagttagaacactttactttattcacctgcttcttcttctatctctctgtcttagtgt 35811118  T
Q  216 tctcaaatagacttggatagtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacct 284  Q
    | ||||||| | ||||||| ||||| ||||||| |||||| || ||||||| |||  ||||| ||||||    
T  35811117 tatcaaataaatttggataatcttccatctcaaacctcttatcctggctgatagtatcctccatcacct 35811049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 32278688 - 32278794
Alignment:
Q  65 atattttgttgcaattgaaccgattcgtctatatatgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctag 164  Q
    ||||||||||||||||||||| | |  ||| ||| |||||||||||||||||||| ||||||||||| || | || |||| |||||||||||||| ||||    
T  32278688 atattttgttgcaattgaacccactattctgtatctgtcaaggcggctttggaggtacccttttgggaacgaatcttcattccggctgagttaaaactag 32278787  T
Q  165 aaggctt 171  Q
    |||||||    
T  32278788 aaggctt 32278794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 15188140 - 15188033
Alignment:
Q  126 tttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatag 225  Q
    |||||||||  |||||||| |  |||||||||||||||  ||||||||||||| |||| |||||||   ||||| ||||||| ||| |||||||| ||||    
T  15188140 tttgggcacgggtcctcattctagctgagttaaagctatcaggcttcactttgctcatatgcttct---tctttttctctgcattagtgctctcatatag 15188044  T
Q  226 acttggatagt 236  Q
     ||||||||||    
T  15188043 gcttggatagt 15188033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 37307257 - 37307320
Alignment:
Q  173 actttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggatagt 236  Q
    ||||||||||  ||||||||||||||||||||| ||||| |||||||| | |||||| ||||||    
T  37307257 actttgttcacatgcttcttcttctttctctctaccttagtgctctcagacagacttagatagt 37307320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 36150672 - 36150718
Alignment:
Q  110 gctttggaggaacccttttgggcacaagtcctcataccggctgagtt 156  Q
    |||||||||| | |||||||||||| ||||||||| |||||||||||    
T  36150672 gctttggaggtatccttttgggcacgagtcctcattccggctgagtt 36150718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 36 - 291
Target Start/End: Complemental strand, 25168011 - 25167755
Alignment:
Q  36 aaatttgaacaaaagt-ttggtattcctcgatattttgttgcaattgaaccgattcgtctatatatgtcaaggcggctttggaggaacccttttgggcac 134  Q
    |||||||||||||||| ||||||||||   ||||| ||||||||||||||| | |  ||| ||| |||||||||||||||||||| |||||||||||||     
T  25168011 aaatttgaacaaaagtattggtattcccatatattctgttgcaattgaaccaactattctgtatctgtcaaggcggctttggaggtacccttttgggcat 25167912  T
Q  135 aagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggata 234  Q
     ||||||| | |||||||||||||| ||||||||||||||||||||||  || |||||||||||||||||||||||| |||| ||| |||||||||||||    
T  25167911 gagtcctctttccggctgagttaaaactagaaggcttcactttgttcacatgtttcttcttctttctctctgccttagtgctttcagatagacttggata 25167812  T
Q  235 gtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctac 291  Q
    |||||| |||||||||| |||||||||| ||| |||| ||||| |||||||||||||    
T  25167811 gtcttccatctcaagccacttgtcatggttgaaagtgtcctccatcacctcttctac 25167755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 10990117 - 10990007
Alignment:
Q  110 gctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcct 209  Q
    |||||||||||||||||||| |||| |||||||||  ||||| |||||||||||||||| ||||||||||||   |||| ||||||||||||| ||||||    
T  10990117 gctttggaggaacccttttgtgcacgagtcctcatttcggctaagttaaagctagaaggattcactttgttctcttgctgcttcttctttctcgctgcct 10990018  T
Q  210 taatgctctca 220  Q
    || ||||||||    
T  10990017 tagtgctctca 10990007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 3949502 - 3949326
Alignment:
Q  36 aaatttgaacaaaagt-ttggtattcctcgatattttgttgcaattgaaccgattcgtctatatatgtcaaggcggctttggaggaacccttttgggcac 134  Q
    |||||||||||||||| |||||||||   |||||| ||||||||||||| | | |  |||  || |||||||||||||||||||| |||||| ||  |||    
T  3949502 aaatttgaacaaaagtattggtattctcagatattctgttgcaattgaatcaactattctgcatctgtcaaggcggctttggaggtacccttctgaacac 3949403  T
Q  135 aagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcctta 211  Q
     ||||||||| | |||| ||||||| ||| || |||||||||| |||| ||| ||||||||||||| ||||||||||    
T  3949402 gagtcctcattctggctcagttaaaactaaaaagcttcactttattcacctgtttcttcttctttccctctgcctta 3949326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 4263398 - 4263501
Alignment:
Q  112 tttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcctta 211  Q
    |||||||||||||||||| ||||  |||||||| |||||||||||||| |||| |||||||| |||||| |  ||   |||||||||| |||||||||||    
T  4263398 tttggaggaacccttttgagcacgggtcctcattccggctgagttaaaactagcaggcttcattttgtttacatg---cttcttctttttctctgcctta 4263494  T
Q  212 atgctct 218  Q
     ||||||    
T  4263495 gtgctct 4263501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 36 - 291
Target Start/End: Complemental strand, 37050169 - 37049912
Alignment:
Q  36 aaatttgaacaaaagt-ttggtattcctcgatattttgttgcaattgaaccgattcgtctatatatgtcaaggcggctttggaggaacccttttgggcac 134  Q
    |||||||||||||||| ||||||||||   ||||| ||||||||||||||| | |  | | ||| | |||| ||||||||||||| ||||||||||||||    
T  37050169 aaatttgaacaaaagtattggtattcccatatattctgttgcaattgaaccaactattttgtatctctcaaagcggctttggaggtacccttttgggcac 37050070  T
Q  135 aagtcctcataccggctgagttaaagctagaa-ggcttcactttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggat 233  Q
     ||||||||| |||||||||||||| |||||| ||||||||||||||||  || |||||||||||| ||||||||||| |||| ||| ||||||||||||    
T  37050069 gagtcctcattccggctgagttaaaactagaaaggcttcactttgttcacatgtttcttcttctttttctctgccttagtgctttcagatagacttggat 37049970  T
Q  234 agtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctac 291  Q
    ||||||| ||||||||||||||||||||| ||| |||| ||||| |||||||||||||    
T  37049969 agtcttccatctcaagcctcttgtcatggttgaaagtgtcctccatcacctcttctac 37049912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 24239870 - 24239993
Alignment:
Q  110 gctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcct 209  Q
    ||||| |||| ||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||| ||||    || |||||||||||||  |||||    
T  24239870 gcttttgaggtacccttttgggcacgggtcctcattccggctgagttaaagctagtaggcttcactttattca---cctacttcttctttctcgatgcct 24239966  T
Q  210 taatgctctcaaatagacttggatagt 236  Q
    || |||||||| |||||||||||||||    
T  24239967 tagtgctctcagatagacttggatagt 24239993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 111 - 234
Target Start/End: Complemental strand, 19852576 - 19852453
Alignment:
Q  111 ctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcctt 210  Q
    ||||||||  || |||||||||||  || ||||| |||| ||||||||| |||| |||| ||||||||| ||  ||||||||||||||| ||||||||||    
T  19852576 ctttggagttactcttttgggcacgggttctcattccgggtgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgcctt 19852477  T
Q  211 aatgctctcaaatagacttggata 234  Q
    | |||||||  |||||||||||||    
T  19852476 agtgctctccgatagacttggata 19852453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 16593810 - 16593920
Alignment:
Q  124 cttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgccttaatgctctcaaat 223  Q
    |||||||||||  || ||||| |||||| ||||||| |||| |||| ||||||||| ||  ||||||| ||||||| ||||||||||| |||||||  ||    
T  16593810 cttttgggcacgggttctcattccggctaagttaaaactagcaggcctcactttgtgcacgtgcttctacttctttttctctgccttagtgctctccgat 16593909  T
Q  224 agacttggata 234  Q
    |||||||||||    
T  16593910 agacttggata 16593920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 16832167 - 16832268
Alignment:
Q  110 gctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcct 209  Q
    |||||||||| |||||||||  |||  |||||||| ||  ||||||||||| ||| |||||||||||||||||  |||||||| ||| ||||||||||||    
T  16832167 gctttggaggcacccttttgaacacgtgtcctcattccaactgagttaaagttagtaggcttcactttgttcacatgcttcttattccttctctctgcct 16832266  T
Q  210 ta 211  Q
    ||    
T  16832267 ta 16832268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 16832337 - 16832390
Alignment:
Q  244 ctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctacttcatc 297  Q
    |||||| || ||||||||||||| |||| ||| | |||||||||||||||||||    
T  16832337 ctcaagtcttttgtcatggctgaaagtgtccttcatcacctcttctacttcatc 16832390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 36 - 288
Target Start/End: Complemental strand, 37344787 - 37344534
Alignment:
Q  36 aaatttgaacaaaagt-ttggtattcctcgatattttgttgcaattgaaccgattcgtctatatatgtcaaggcggctttggaggaacccttttgggcac 134  Q
    |||||||||||||| | ||||||||||  |||||| || ||||| |||| | | |  | | |||||||||||||||||||||||  ||||||||||||||    
T  37344787 aaatttgaacaaaaatattggtattcccagatattatgctgcaaatgaatcaactattatgtatatgtcaaggcggctttggagatacccttttgggcac 37344688  T
Q  135 aagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggata 234  Q
     | ||||||| |||||||||||||| |||||| | ||||||||||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||||    
T  37344687 gaatcctcattccggctgagttaaaactagaatgattcactttgttcacctgtttcttcttctttctctctgccttagtgctttcaaatagacttggata 37344588  T
Q  235 gtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttc 288  Q
    |||||| ||||||||||||  |||||||||||||||| ||| | ||||||||||    
T  37344587 gtcttccatctcaagcctcaggtcatggctgagagtgtccttcatcacctcttc 37344534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 111 - 298
Target Start/End: Complemental strand, 31092408 - 31092221
Alignment:
Q  111 ctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcctt 210  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||| ||||  || ||||||||||||||||||| |||    
T  31092408 ctttggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggcatcactttattcacgtgattcttcttctttctctctgtctt 31092309  T
Q  211 aatgctctcaaatagacttggatagtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctacttcatct 298  Q
    | |||||||| ||||||||||||||||||| | ||||||||||||||| ||| | | |||| | ||| ||||||||||||||||||||    
T  31092308 agtgctctcagatagacttggatagtcttccagctcaagcctcttgtcttggttaatagtgtcatccatcacctcttctacttcatct 31092221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 236
Target Start/End: Original strand, 18811722 - 18811858
Alignment:
Q  100 tgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttcttt 199  Q
    ||||||||  ||||||||||| |||||||||||||  |||||||| |||||||||||||||||| || |||||||||| | || ||||||||||||||||    
T  18811722 tgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaagcttcactttatgcacctgcttcttcttcttt 18811821  T
Q  200 ctctctgccttaatgctctcaaatagacttggatagt 236  Q
    |||||||||||| |||||||||||| |||||||||||    
T  18811822 ctctctgccttattgctctcaaataaacttggatagt 18811858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 14296286 - 14296411
Alignment:
Q  111 ctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcctt 210  Q
    ||||||||| |||||||||| ||| ||| ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||    
T  14296286 ctttggaggtacccttttggacacgagtgctcattccggctgagttaaagctagtaggcttcattttgttcatctgcttcttcttctttctctctacctt 14296385  T
Q  211 aatgctctcaaatagacttggatagt 236  Q
    | | |||||| |||||||||||||||    
T  14296386 agtactctcagatagacttggatagt 14296411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 8413844 - 8413933
Alignment:
Q  110 gctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttcttt 199  Q
    |||||||||| ||||||||| ||||  |||||||| |||| |||||| ||||||| ||||||||||||||||  ||||||||||| ||||    
T  8413844 gctttggaggtacccttttgagcacgggtcctcattccggttgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttt 8413933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 18693193 - 18693124
Alignment:
Q  111 ctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgtt 180  Q
    |||||||||||||||||| |||||| |||||||| |||||| |||||||||||| || ||||||||||||    
T  18693193 ctttggaggaacccttttaggcacaggtcctcattccggcttagttaaagctagcagacttcactttgtt 18693124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 13502775 - 13502653
Alignment:
Q  110 gctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcct 209  Q
    |||||||||  || |||||||||||    |||||| | ||||||||||||||||| || | |  |||||||||   |||||||||||||| |||||||||    
T  13502775 gctttggagttactcttttgggcacggaccctcattctggctgagttaaagctagcagaccttcctttgttcacgagcttcttcttctttttctctgcct 13502676  T
Q  210 taatgctctcaaatagacttgga 232  Q
    || |||||||  | |||||||||    
T  13502675 tagtgctctccgaaagacttgga 13502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 293
Target Start/End: Original strand, 13061952 - 13062172
Alignment:
Q  73 ttgcaattgaaccgattcgtctatatatgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttc 172  Q
    ||||||||| ||| |||  ||| ||| |||||||||||||||||||| || |||||  ||||  ||||||||  ||||||||||||||||| ||||| ||    
T  13061952 ttgcaattggaccaattattctgtatttgtcaaggcggctttggaggtactcttttcagcacgggtcctcatttcggctgagttaaagctaaaaggcatc 13062051  T
Q  173 actttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggatagtcttctatctcaagcctcttgtcatggctgagagtga 272  Q
    |||||||||| |||||||||||||||| |||||| |||| |||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||     
T  13062052 actttgttcacctgcttcttcttctttttctctgtcttagtgctctcagatagacttggaaagtcttccatctcaagtctcttgtcatggctgagagtgt 13062151  T
Q  273 cctccgtcacctcttctactt 293  Q
    ||||| |||| ||||||||||    
T  13062152 cctccatcacatcttctactt 13062172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 110 - 297
Target Start/End: Original strand, 41035052 - 41035236
Alignment:
Q  110 gctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcct 209  Q
    ||||||||||| || ||||||||||  |||||||| ||||||||||||||||||||||||||||   | |||| |||||||||||||||| |||||||||    
T  41035052 gctttggaggagcctttttgggcacgggtcctcattccggctgagttaaagctagaaggcttcaaaatattcacctgcttcttcttctttttctctgcct 41035151  T
Q  210 taatgctctcaaatagacttggatagtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctacttcatc 297  Q
    || |||||||| ||||||||||||||| || | ||  ||| || | |||||||||||||||| |||||  ||||||||||||||||||    
T  41035152 tattgctctcagatagacttggatagtgttgt-tc-aaagtct-tcgtcatggctgagagtgtcctccaacacctcttctacttcatc 41035236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 50903495 - 50903635
Alignment:
Q  96 tatatgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttctt 195  Q
    |||||| |||| |||||||||||| |||  |||||||||  ||||||||  |||||||||| ||||||| ||||||||||||||||| |||||||||||     
T  50903495 tatatgccaagtcggctttggaggtaccgctttgggcacgggtcctcatttcggctgagttgaagctagtaggcttcactttgttcacctgcttcttctg 50903594  T
Q  196 ctttctctctgccttaatgctctcaaatagacttggatagt 236  Q
    ||||| |||||||||| |||||||  | |||||||||||||    
T  50903595 ctttcactctgccttagtgctctctgacagacttggatagt 50903635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 17114734 - 17114867
Alignment:
Q  103 caaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctc 202  Q
    |||||| |||||||||| |||||||||| ||   |||||||| | ||| ||||||||||||| |||||||||||||||||  || |||||||||||||||    
T  17114734 caaggccgctttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcactttgttcacatgtttcttcttctttctc 17114833  T
Q  203 tctgccttaatgctctcaaatagacttggatagt 236  Q
    |||| |||| |||||||| ||||||||| |||||    
T  17114834 tctgtcttagtgctctcagatagacttgcatagt 17114867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 49491908 - 49492032
Alignment:
Q  111 ctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcctt 210  Q
    ||||||||| ||||||||||||||  |||||||| ||||||||||| ||||||| ||||| |||||||||||  |||||||||| ||||||| |||||||    
T  49491908 ctttggaggtacccttttgggcacgggtcctcattccggctgagttgaagctagtaggct-cactttgttcacatgcttcttctgctttctccctgcctt 49492006  T
Q  211 aatgctctcaaatagacttggatagt 236  Q
    | ||||||| || |||||||||||||    
T  49492007 agtgctctctaacagacttggatagt 49492032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 3374403 - 3374307
Alignment:
Q  103 caaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttcttt 199  Q
    |||||| |||||||||  ||||||||||||||| |||||||| |||||||||||||| ||||  ||||||||||||||||  |||||||||||||||    
T  3374403 caaggcagctttggagctacccttttgggcacatgtcctcattccggctgagttaaatctagccggcttcactttgttcacttgcttcttcttcttt 3374307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 19394156 - 19394280
Alignment:
Q  112 tttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcctta 211  Q
    |||| ||| ||||||||||||||  |||||||| || ||| ||||||||| |||||||||||||||| |||  ||||||||||||||| ||||||| |||    
T  19394156 tttgaaggtacccttttgggcacgggtcctcattccagctaagttaaagcaagaaggcttcactttgctcacatgcttcttcttctttttctctgcttta 19394255  T
Q  212 atgctctcaaatagacttggatagt 236  Q
     |||||||  |||| ||||||||||    
T  19394256 gtgctctccgataggcttggatagt 19394280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 14344158 - 14344076
Alignment:
Q  100 tgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttca 182  Q
    ||||||| || ||||||||| |||||||||| ||| |||| |||| |||  ||||||||| ||||||||||||||||||||||    
T  14344158 tgtcaagtcgactttggaggtacccttttggacacgagtcatcattccgattgagttaaaactagaaggcttcactttgttca 14344076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 39332425 - 39332359
Alignment:
Q  112 tttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttg 178  Q
    |||| ||| ||||||||||||||  ||||||||  ||||||||||||||| || |||||||||||||    
T  39332425 tttgaaggtacccttttgggcacgggtcctcatttcggctgagttaaagcaagcaggcttcactttg 39332359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 121 - 294
Target Start/End: Original strand, 35526599 - 35526776
Alignment:
Q  121 acccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgccttaat----gct 216  Q
    ||||||||||||||  |||||||| ||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |||| || ||||||    |||    
T  35526599 acccttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttcttcttactctttgtcttaattagtgct 35526698  T
Q  217 ctcaaatagacttggatagtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctacttc 294  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  35526699 ctcagatagacttggatagtcttccatctcaagcctcttgtcatggctgacagtgtcctccatcacctcttctacttc 35526776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 100 - 294
Target Start/End: Complemental strand, 29346901 - 29346706
Alignment:
Q  100 tgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctt- 198  Q
    |||||||||||||||||||| || |||||| ||||  |||||||| |||||| ||||||||||| ||||| |||| ||||||| |||||||||||||||     
T  29346901 tgtcaaggcggctttggaggtactcttttgtgcacgggtcctcattccggctaagttaaagctataaggcatcacgttgttcacctgcttcttcttcttc 29346802  T
Q  199 -----tctctctgccttaatgctctcaaatagacttggatagtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctactt 293  Q
         | |||||| |||| |||||||||||||||||||| ||||||| ||||||||||     ||||||||||||||| ||||| |||||||||||||||    
T  29346801 ttctttttctctgtcttagtgctctcaaatagacttggaaagtcttccatctcaagcc-----tcatggctgagagtgtcctccatcacctcttctactt 29346707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 51524970 - 51524834
Alignment:
Q  100 tgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttcttt 199  Q
    ||||||||  ||||||||||| |||||||||||||  |||||||| |||||||||||||||||| ||||| ||||||| | || ||||||||||||||||    
T  51524970 tgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttcttt 51524871  T
Q  200 ctctctgccttaatgctctcaaatagacttggatagt 236  Q
    ||||| |||||| |||||||| |||||||||||||||    
T  51524870 ctctcagccttattgctctcagatagacttggatagt 51524834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 16893184 - 16893044
Alignment:
Q  96 tatatgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttctt 195  Q
    |||||| |||||| |||||||||| ||||||||| ||||  |||||||| ||||||||||| || |||| ||||||||||||||||| ||||||||| |     
T  16893184 tatatggcaaggcagctttggaggcacccttttgagcacgggtcctcattccggctgagttgaacctagtaggcttcactttgttcacctgcttcttttg 16893085  T
Q  196 ctttctctctgccttaatgctctcaaatagacttggatagt 236  Q
    |||| | ||||||||| |||||||  | |||||||||||||    
T  16893084 ctttttatctgccttagtgctctctgacagacttggatagt 16893044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 26796887 - 26796970
Alignment:
Q  150 ctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggat 233  Q
    ||||||||||||| | || |||||||||||| |  ||||||||||||||||||||||||||| |||||||| ||||||| ||||    
T  26796887 ctgagttaaagctggtagacttcactttgttaacatgcttcttcttctttctctctgccttagtgctctcagatagactcggat 26796970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 31067228 - 31067144
Alignment:
Q  150 ctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggata 234  Q
    ||||||||||||||| | || ||||||||| ||  ||||||||||||||| ||||||||||| |||||||  |||||||||||||    
T  31067228 ctgagttaaagctagcaagcctcactttgtgcacatgcttcttcttctttttctctgccttagtgctctccgatagacttggata 31067144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 21844920 - 21845044
Alignment:
Q  112 tttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcctta 211  Q
    ||||||||  |||||||| ||||  ||||| ||  | ||||||||||| | || || |||||||||  |||   |||||||||  ||| |||||||||||    
T  21844920 tttggaggtgcccttttgagcacgggtccttatttcagctgagttaaatcaagcagacttcacttttctcacaggcttcttctaatttttctctgcctta 21845019  T
Q  212 atgctctcaaatagacttggatagt 236  Q
    ||||||||| |||| ||||||||||    
T  21845020 atgctctcatataggcttggatagt 21845044  T

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Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 100 - 236
Target Start/End: Original strand, 27786804 - 27786940
Alignment:
Q  100 tgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttcttt 199  Q
    ||||||||  |||||||||||||| ||||||||||   ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  27786804 tgtcaaggtagctttggaggaaccattttgggcacggctcctcattccggctgagttaaagctagaaggcttcactttattcatctgcttattcttcttt 27786903  T
Q  200 ctctctgccttaatgctctcaaatagacttggatagt 236  Q
    ||||| |||||| |||||||| |||||||||||||||    
T  27786904 ctctccgccttattgctctcagatagacttggatagt 27786940  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 103 - 298
Target Start/End: Complemental strand, 29369203 - 29369008
Alignment:
Q  103 caaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctc 202  Q
    |||||||| |||||| | | ||||||||||||  |||||||| | |||| |||||||||| |||||| ||||||| ||||  ||||||||||||||| ||    
T  29369203 caaggcggatttggatgtatccttttgggcacgggtcctcattctggctcagttaaagcttgaaggcatcactttattcacgtgcttcttcttctttatc 29369104  T
Q  203 tctgccttaatgctctcaaatagacttggatagtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctacttcatct 298  Q
    | || |||| |||||||| ||||||||||||||||||| | ||||||||||||||||||  | | |||| ||||  ||||||||||||||||||||    
T  29369103 tttgtcttagtgctctcagatagacttggatagtcttccagctcaagcctcttgtcatgattaatagtgtcctctatcacctcttctacttcatct 29369008  T

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Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 100 - 232
Target Start/End: Original strand, 36206437 - 36206569
Alignment:
Q  100 tgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttcttt 199  Q
    |||||||||  |||||||||||| ||||| ||||| ||||||||| ||| || ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  36206437 tgtcaaggcaactttggaggaactcttttaggcacgagtcctcattccgactaagttaaagctagaaggcttcactttattcatttgcttcttcttcttt 36206536  T
Q  200 ctctctgccttaatgctctcaaatagacttgga 232  Q
    |||||||||||  |||||||| |||||||||||    
T  36206537 ctctctgccttggtgctctcagatagacttgga 36206569  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 8831250 - 8831373
Alignment:
Q  111 ctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcctt 210  Q
    ||||||||  || |||||| ||||  |||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||| | ||||||||||    
T  8831250 ctttggagttacacttttgagcacgggtcctcattccggctgagttaaagctagcaggcctcactttgttcatgtgcttcttcttctctttctctgcctt 8831349  T
Q  211 aatgctctcaaatagacttggata 234  Q
    | |||||||| |||||||||||||    
T  8831350 agtgctctcagatagacttggata 8831373  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 28225740 - 28225864
Alignment:
Q  110 gctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcct 209  Q
    ||||| |||| | |||||||| |||| |||||||| ||||||||||||||| ||  |  |||||||||| |||  ||||||||||| | ||||||| |||    
T  28225740 gcttttgaggtatccttttggacacatgtcctcattccggctgagttaaagttaacaaacttcactttgatcacatgcttcttcttttctctctctacct 28225839  T
Q  210 taatgctctcaaatagacttggata 234  Q
    || |||||||| |||||||||||||    
T  28225840 tagtgctctcagatagacttggata 28225864  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 399778 - 399873
Alignment:
Q  141 tcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggatagt 236  Q
    |||| ||| |||| |||||||||| |  | ||||||||||||  || |||||||||||||||||||||||| |||||||| ||| ||| |||||||    
T  399778 tcattccgactgaattaaagctagcaaacctcactttgttcacatgtttcttcttctttctctctgccttagtgctctcatataaactcggatagt 399873  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 8831429 - 8831475
Alignment:
Q  251 ctcttgtcatggctgagagtgacctccgtcacctcttctacttcatc 297  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||||    
T  8831429 ctcttgtcatggctgagagagtcctccatcacctcttctacttcatc 8831475  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 30646453 - 30646383
Alignment:
Q  114 tggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatc 184  Q
    |||||| |||||||||||||| ||  ||||| || |||||||| || |||| ||||||| |||||||||||    
T  30646453 tggaggtacccttttgggcacgagctctcattcctgctgagttgaaactagcaggcttctctttgttcatc 30646383  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 36206598 - 36206658
Alignment:
Q  237 cttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctacttcatc 297  Q
    |||| |||||||| |||| |||||||||||||||| ||||  || |||| |||||||||||    
T  36206598 cttccatctcaagtctctcgtcatggctgagagtgtcctctatctcctcatctacttcatc 36206658  T

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Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 106 - 298
Target Start/End: Original strand, 19407866 - 19408067
Alignment:
Q  106 ggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttca---------tctgcttcttcttc 196  Q
    |||||||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||  ||||||||||||         ||| ||||||||||    
T  19407866 ggcggctttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacctgcttcttcttcttcttcttc 19407965  T
Q  197 tttctctctgccttaatgctctcaaatagacttggatagtcttctatctcaagcctcttgtcatggctgagagtgacctccgtcacctcttctacttcat 296  Q
    ||| ||||||  ||| |||||||| |||| |||||||||||||| ||||||||||| ||||||||||| | |||| ||||  |||||| |||||||||||    
T  19407966 tttatctctgttttagtgctctcagataggcttggatagtcttccatctcaagccttttgtcatggctaatagtgtcctcaatcacctattctacttcat 19408065  T
Q  297 ct 298  Q
    ||    
T  19408066 ct 19408067  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 26449549 - 26449672
Alignment:
Q  96 tatatgtcaaggcggctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttctt 195  Q
    |||||||| |||| | |||||||| |||||||||| ||| ||||||||| ||||||||| | ||||||| |||||||||| |||||| |||||||||||     
T  26449549 tatatgtcgaggcagttttggaggtacccttttggacacgagtcctcattccggctgagctgaagctagtaggcttcactctgttcacctgcttcttctg 26449648  T
Q  196 ctttctctctgccttaatgctctc 219  Q
    |||||||||||||||| |||||||    
T  26449649 ctttctctctgccttagtgctctc 26449672  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 33191369 - 33191264
Alignment:
Q  112 tttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcctta 211  Q
    |||| ||| |||||| |||||||  ||||||||  | |||||||||||||||| ||||||||||||| |||  || ||||||||| || ||||||| |||    
T  33191369 tttgaaggtacccttctgggcacgggtcctcatgtcagctgagttaaagctagcaggcttcactttgctcacatgtttcttcttcattttctctgcttta 33191270  T
Q  212 atgctc 217  Q
     |||||    
T  33191269 gtgctc 33191264  T

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Target: scaffold0531 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 10352 - 10228
Alignment:
Q  110 gctttggaggaacccttttgggcacaagtcctcataccggctgagttaaagctagaaggcttcactttgttcatctgcttcttcttctttctctctgcct 209  Q
    |||||||||  || ||||| |||||  |||||||| |||||||||||||| |||| |||| ||||||||| ||  ||||||||||||||| |||||||||    
T  10352 gctttggagttactcttttaggcacgggtcctcattccggctgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgcct 10253  T
Q  210 taatgctctcaaatagacttggata 234  Q
    || |||||||  |||||||||||||    
T  10252 tagtgctctccgatagacttggata 10228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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