View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_24 (Length: 251)
Name: NF10639_low_24
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 40453349 - 40453467
Alignment:
| Q |
1 |
atttgaagagtgaagaatcccatgacctgaacattgatgccatatggcttgggagttaagcctcatctagtatgagtcgggacttgactcttgagggaga |
100 |
Q |
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| T |
40453349 |
atttgaagagtgaagaatcccatgacctgaacgttgatgccatatggcttgggagttaagcctcatctagtatgagtcgggacttgactcttgagggaga |
40453448 |
T |
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| Q |
101 |
aggaagcgtcgagataccc |
119 |
Q |
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|||||| |||||||||||| |
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| T |
40453449 |
aggaagtgtcgagataccc |
40453467 |
T |
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Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 40458221 - 40458344
Alignment:
| Q |
118 |
ccaaccctaattactatgtgatacttgag-agcaagtggctatctatatttataggagaaagtcattgagccatcaagaaggnnnnnnntaaataataat |
216 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
40458221 |
ccaaccctaattactatctgatacttgaggagcaagtggctatctatatttataggagaaagtcattgagccatcaagaaggaaaa----aaaaaataat |
40458316 |
T |
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| Q |
217 |
ctctatttctaaaacgaggcctttgcta |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
40458317 |
ctctatttctaaaacgaggcctttgcta |
40458344 |
T |
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