View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_25 (Length: 250)
Name: NF10639_low_25
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9841361 - 9841122
Alignment:
| Q |
1 |
acgtggtcggcgttcgtacgcttcagcaaaaggggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcatagttaaacaagcaggtaaga |
100 |
Q |
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| T |
9841361 |
acgtggacggcgttcgtatgcttcagcaaaaggggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcagagttaaacaagcaggtaaga |
9841262 |
T |
|
| Q |
101 |
ggaaccaaagtaaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcaatttacaactctaatcatcgtgatcatgtgagttagagtctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9841261 |
ggaaccaaagtaaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcactttacaactcttatcatcgtgatcatgtgagttagagtctg |
9841162 |
T |
|
| Q |
201 |
aattagaggatccgcgcttcttcatggattgaattctctg |
240 |
Q |
| |
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||| |||||| ||| ||||||||||||||||||||||||| |
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| T |
9841161 |
aatcagaggaaccgtgcttcttcatggattgaattctctg |
9841122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 208
Target Start/End: Complemental strand, 9902281 - 9902107
Alignment:
| Q |
34 |
ggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcatagttaaacaagcaggtaagaggaaccaaagtaaggacatgaaacaacaagtct |
133 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||| |||||| |||| | || || |||||||||||||||||||| || ||||| ||||||| |
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| T |
9902281 |
ggagctggcaataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtct |
9902182 |
T |
|
| Q |
134 |
tcaagaagcaacaactttgaaatcaatttacaactctaatcatcgtgatcatgtgagttagagtctgaattagag |
208 |
Q |
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| T |
9902181 |
tcaggaagcaacacctttgaaattacttcacaactcttagtggcgtgatcatatgagttagagactgaatcagag |
9902107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 9846419 - 9846271
Alignment:
| Q |
22 |
ttcagcaaaaggggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcatagttaaacaagcaggtaagaggaaccaaagtaaggacatga |
121 |
Q |
| |
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|||| ||||| ||||||| ||||||||||||||||||| ||| |||||||| |||||| | |||| || |||| ||||| ||||||| |||||| || | |
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| T |
9846419 |
ttcaacaaaaagggagctggcaatagtagcagcccaagctttacaaacataccttgcagaattaatcaggcagttaagatgaaccaacctaaggatatca |
9846320 |
T |
|
| Q |
122 |
aacaacaagtcttcaagaagcaacaactttgaaatcaatttacaactct |
170 |
Q |
| |
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|||| ||||| |||| ||||||||| | ||||||||| || |||||||| |
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|
| T |
9846319 |
aacaccaagtgttcaggaagcaacagcgttgaaatcacttcacaactct |
9846271 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 9859708 - 9859636
Alignment:
| Q |
96 |
taagaggaaccaaagtaaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcaatttacaact |
168 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||| || || | |||||||||| ||||||||| |
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| T |
9859708 |
taagagggaccaaagtaaggatatgaaacctcaagtcttcaaggagaaaaagttttgaaatcattttacaact |
9859636 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 2327062 - 2327223
Alignment:
| Q |
9 |
ggcgttcgtacgcttcagcaaaaggggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcatagttaaacaagcaggtaagaggaaccaa |
108 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| |||||||||||||||| ||||| ||||| |||||| |||||| || ||| |||||||||| || |
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| T |
2327062 |
ggcgttcgtatgcttcagcaaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaacaaa |
2327161 |
T |
|
| Q |
109 |
agtaaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcaatttacaactct |
170 |
Q |
| |
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||||| || ||||||| |||||||||||| || | |||||||||||||| ||||||||||| |
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|
| T |
2327162 |
agtaaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaactct |
2327223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 39571717 - 39571557
Alignment:
| Q |
10 |
gcgttcgtacgcttcagcaaaaggggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcatagttaaacaagcaggtaagaggaaccaaa |
109 |
Q |
| |
|
||||| |||| ||| ||||||| |||||| ||||||||| ||||||| ||||||||||||||||| | |||||| | || |||||||||||||| |
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| T |
39571717 |
gcgttggtacactttagcaaaatcggagctgcgaatagtagccgcccaagatttgcaaacatatcttgtagagttaattaggctattaagaggaaccaaa |
39571618 |
T |
|
| Q |
110 |
gtaaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcaatttacaactct |
170 |
Q |
| |
|
||| || || |||||| || |||||| | |||| |||||||||||||| ||||||||||| |
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|
| T |
39571617 |
ctaaagatatcaaacaataaatcttcagggagcagcaactttgaaatcactttacaactct |
39571557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 4145222 - 4145070
Alignment:
| Q |
18 |
acgcttcagcaaaaggggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcatagttaaacaagcaggtaagaggaaccaaagtaaggac |
117 |
Q |
| |
|
||||||| ||||| ||||||| |||||||| |||||||| |||||||||||| |||||| |||||| || || ||| ||| | ||| |||||| |
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| T |
4145222 |
acgcttcggcaaacagggagctgcgaatagtagtagcccaagatttgcaaacataccttgcagagttaagcagacatttaacagggagaaaactaaggat |
4145123 |
T |
|
| Q |
118 |
atgaaacaacaagtcttcaagaagcaacaactttgaaatcaatttacaactct |
170 |
Q |
| |
|
|| ||||| |||||||||| | | |||||||||||||||| ||||||||||| |
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|
| T |
4145122 |
atcaaacaccaagtcttcagggattaacaactttgaaatcactttacaactct |
4145070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 39575723 - 39575563
Alignment:
| Q |
10 |
gcgttcgtacgcttcagcaaaaggggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcatagttaaacaagcaggtaagaggaaccaaa |
109 |
Q |
| |
|
||||| |||| ||| ||||||| ||||||| ||||| || | |||| | ||||||||||||||||| | |||||| | ||| |||||||||||||| |
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|
| T |
39575723 |
gcgttggtacactttagcaaaatcggagcttcgaatagaagtaccccatgttttgcaaacatatcttgtagagttaattatgcaattaagaggaaccaaa |
39575624 |
T |
|
| Q |
110 |
gtaaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcaatttacaactct |
170 |
Q |
| |
|
| | || || |||||||| ||||||| | |||| || |||| |||| ||||||||||| |
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|
| T |
39575623 |
ctgaagatatcaaacaacaggtcttcagggagcagcacttttggaatctctttacaactct |
39575563 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 7256201 - 7256126
Alignment:
| Q |
11 |
cgttcgtacgcttcagcaaaaggggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcatagttaa |
86 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| || ||| |||||| |
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|
| T |
7256201 |
cgttcatacgcttcagcaaaatgggagctgccaattgtagcagcccaaggtttgcaaacatacctcgcagagttaa |
7256126 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 5054934 - 5055042
Alignment:
| Q |
28 |
aaaaggggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcatagttaaacaagcaggtaagaggaaccaaagtaaggacatgaaacaac |
127 |
Q |
| |
|
|||| ||||||| |||||||||||||||| | |||||| ||||| |||| | ||||||||| || ||| |||||||||||||| || |||||||| | |
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|
| T |
5054934 |
aaaaagggagctgccaatagtagcagcccatgatttgcatacataccttgtagagttaaacagtgagttaataggaaccaaagtaaagatatgaaacatc |
5055033 |
T |
|
| Q |
128 |
aagtcttca |
136 |
Q |
| |
|
||||||||| |
|
|
| T |
5055034 |
aagtcttca |
5055042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 46672895 - 46672970
Alignment:
| Q |
95 |
gtaagaggaaccaaagtaaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcaatttacaactct |
170 |
Q |
| |
|
||||||||||||||||||| || | |||||||||||||| | ||||||| ||||| ||||| | ||||||||||| |
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|
| T |
46672895 |
gtaagaggaaccaaagtaaagatgtaaaacaacaagtcttaaggaagcaaaaacttagaaatgagtttacaactct |
46672970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 46445311 - 46445217
Alignment:
| Q |
52 |
agcccaaggtttgcaaacatatcttgcatagttaaacaagcaggtaagaggaaccaaagtaaggacatgaaacaacaagtcttcaagaagcaaca |
146 |
Q |
| |
|
|||||||| | |||||||| | |||||| |||||| || |||| |||||||||||||||||| | || || || |||||||||| ||||||||| |
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|
| T |
46445311 |
agcccaagatatgcaaacaaaccttgcagagttaagcaggcagctaagaggaaccaaagtaaataaataaagcatcaagtcttcaggaagcaaca |
46445217 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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