View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_27 (Length: 245)
Name: NF10639_low_27
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 50554720 - 50554950
Alignment:
| Q |
5 |
tttcttcacatttgaattttgatatctcaggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggataccagtcaacaatttcatg |
104 |
Q |
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| T |
50554720 |
tttcttcccatttgaattttgatctctcaggttgaaaaactgaaactggaaaatgcaacactatataaacagtttactgataccagtcaacaatttcatg |
50554819 |
T |
|
| Q |
105 |
aggctgatacaaataaccgagtgctaaaatcagatgtagaagctttgagagctaaggtatacagtgagct-------taattatgcatacgaaaataaat |
197 |
Q |
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| T |
50554820 |
aggctgatacaaataaccgagtgctaaaatcagatgttgaagctttgagagctaaggtatacagtgagcttattatataattattcatacgaaaataaat |
50554919 |
T |
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| Q |
198 |
atcaatgattgaagaaattaactaacatata |
228 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
50554920 |
atcactgattgaagaaattaactaacatata |
50554950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 50817342 - 50817513
Alignment:
| Q |
5 |
tttcttcacatttgaattttgatatctcaggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggataccagtcaacaatttcatg |
104 |
Q |
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||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| | |
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| T |
50817342 |
tttcttcccatttgaattttgatttcttaggttggaaaactgaaactggaaaatgcaaccctatacaaacagtttacggatgctagtcaacaatttcacg |
50817441 |
T |
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| Q |
105 |
aggctgatacaaataaccgagtgctaaaatcagatgtagaagctttgagagctaaggtatacagtgagctta |
176 |
Q |
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| T |
50817442 |
aggctgatacaaataaccaagtgctaaaatcagatgtagaagctttgagagctaaggtatacggagagctta |
50817513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 50858522 - 50858351
Alignment:
| Q |
5 |
tttcttcacatttgaattttgatatctcaggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggataccagtcaacaatttcatg |
104 |
Q |
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||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||| | |
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| T |
50858522 |
tttcttcccatttgaattttgatttcttaggttggaaaactgaaactggaaaatgcaaccctatacaaacagtttacggatgctagtcaacaatttcacg |
50858423 |
T |
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| Q |
105 |
aggctgatacaaataaccgagtgctaaaatcagatgtagaagctttgagagctaaggtatacagtgagctta |
176 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
50858422 |
aggctgatacaaataaccaagtgctaaaatcagatgtagaagctttgagagctaaggtatacggagagctta |
50858351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 165
Target Start/End: Complemental strand, 1130656 - 1130524
Alignment:
| Q |
33 |
aggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggataccagtcaacaatttcatgaggctgatacaaataaccgagtgctaaa |
132 |
Q |
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|||||||| || ||| ||||||||||||| |||| ||| ||| |||| ||| |||| |||||||||| || ||| | || || |||||||| ||||| |
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| T |
1130656 |
aggttgaacaattgaggctggaaaatgcaagcctatttaagcagcttacagatgccagccaacaatttcgcgatgctaacactaacaaccgagtactaaa |
1130557 |
T |
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| Q |
133 |
atcagatgtagaagctttgagagctaaggtata |
165 |
Q |
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||| ||||| ||||||||||||||||||||||| |
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| T |
1130556 |
atccgatgttgaagctttgagagctaaggtata |
1130524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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