View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_29 (Length: 242)
Name: NF10639_low_29
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_29 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 5112933 - 5113166
Alignment:
| Q |
17 |
aaaaagatgcaatcataggacctgcaaagcctcttacaagttcaacttcaccagccatatatccatccatgccatttggagaattgttggagaattttat |
116 |
Q |
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| T |
5112933 |
aaaaagatgcaatcataggacctgcaaagcctcttgcaagttcaacttcacaagccatatatccatccatgccatttggagaattgttggagaattttat |
5113032 |
T |
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| Q |
117 |
gaacaagggtccttactttgaagctgaatttcgcttataaaaatttaatctttgtgcctgaggaaatatacaagtaatcatgaataagttgt-------- |
208 |
Q |
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| T |
5113033 |
gaacaagggtccttactttgaagctgaattccgcttataaaaatttaatttttgtgcctgaggaaatatacaagtaatcatgaataagttgttggactgg |
5113132 |
T |
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| Q |
209 |
tatccaagcaaatgaataatttatcttgtagttt |
242 |
Q |
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| T |
5113133 |
tatccaagcaaatgaataatttatcttgtagttt |
5113166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 5106418 - 5106538
Alignment:
| Q |
18 |
aaaagatgcaatcataggacctgcaaagcctcttacaagttcaacttcaccagccatatatccatccatgccatttggagaattgttggagaattttatg |
117 |
Q |
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|||||| ||||| ||||||||||| ||||||||| |||||||||||||||| | ||||| |||| ||| |||||||||| || |||||||||| |
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| T |
5106418 |
aaaagaagcaattataggacctgccaagcctcttttaagttcaacttcaccaccaatatactcatctatggaatttggagaaatgctggagaatttatac |
5106517 |
T |
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| Q |
118 |
aacaagggtccttactttgaa |
138 |
Q |
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| T |
5106518 |
aacaagggtcctaactttgaa |
5106538 |
T |
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