View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10639_low_3 (Length: 534)
Name: NF10639_low_3
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 4 - 521
Target Start/End: Original strand, 34009105 - 34009617
Alignment:
| Q |
4 |
atgaagagcagagtagtagatcaagtttcttttttgataatattctttgtcataattttaaactttgtatccattgcttggatttatgttacacacataa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||| | ||| | || | |
|
|
| T |
34009105 |
atgaagagcagagtagtagatcaagtttctta----ataatattatttgtcataattttaaacttcgtatccatttctt-------ttttaataatatta |
34009193 |
T |
|
| Q |
104 |
cattt---tatttatttactattctgtttcttaataaagctaatcgagtagtagagagaatgg-tcggtaattagtagaga-------tttcacatatta |
192 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
34009194 |
tttttccatatttatttactattctgtttcttaataaagctaatcgagtagtagagagaatgggtcggtaattagtagagactagagatttcacatatta |
34009293 |
T |
|
| Q |
193 |
acacatagtgggaattattatgtggaaaaggtcaaatggggccgtgttgctattatgaggtttgaattatacgaggtcaaatgtttttcttaactattaa |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
34009294 |
acacatagtgggaattattatgtggaaaaggtcaaatggggccgtgttgctattatgaggtttgaattatatgaggccaaatgtttttcttaactattac |
34009393 |
T |
|
| Q |
293 |
ttattgcacatctaactgaatatagtgggtaggaaatttcacattcaaattcgtaaacaatccatgacttaatgtaaaatgaaatgtagacctctcagtg |
392 |
Q |
| |
|
| |||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34009394 |
t----gcacatctaactga-tatagtgggtgggaaatttcacattcaaactcgtaaacaatccatgacttaatgtaaaatgaaatgtagacctctcagtg |
34009488 |
T |
|
| Q |
393 |
atgtaatgatgatgctggctcaatggaggtgttggaaataagttaagtcaagttgataaaaattgattcaatttgaaattcaatttgagtttgatgcaac |
492 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
34009489 |
atgtaatgatgatgctggctcagtcgaggtgttggaaataagttaagttaagttgataaaaattgattcaattcaaaatttaatttgagtttgatgcaac |
34009588 |
T |
|
| Q |
493 |
tcnnnnnnnagtcgatgagttgttcatga |
521 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
34009589 |
tctttttttagtcgatgagttgttcatga |
34009617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 391 - 493
Target Start/End: Original strand, 34009620 - 34009722
Alignment:
| Q |
391 |
tgatgtaatgatgatgctggctcaatggaggtgttggaaataagttaagtcaagttgataaaaattgattcaatttgaaattcaatttgagtttgatgca |
490 |
Q |
| |
|
|||| ||||||||||||| | ||| |||| ||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||||||||||||| |
|
|
| T |
34009620 |
tgatttaatgatgatgctagttcagtggaagtgttggaaataagttaagtcgagttgatgaaaattgattaggttctaaattcaatttgagtttgatgca |
34009719 |
T |
|
| Q |
491 |
act |
493 |
Q |
| |
|
||| |
|
|
| T |
34009720 |
act |
34009722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 201 - 336
Target Start/End: Original strand, 33996591 - 33996723
Alignment:
| Q |
201 |
tgggaattattatgtggaaaaggtcaaatggggccgtgttgctattatgaggtttgaattatacgaggtcaa---atgtttttcttaactattaattatt |
297 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||| |||||||||||||| ||||||||||| || |||||||| | || |||||| ||| |||||| |
|
|
| T |
33996591 |
tgggaattattatgag-aaatggtcaaatggggtcgtgttgctattattaggtttgaattctatgaggtcaaagcaagtgtttctt-act----attatt |
33996684 |
T |
|
| Q |
298 |
gcacatctaactgaatatagtgggtaggaaatttcacat |
336 |
Q |
| |
|
|||||| ||||||||| |||| |||||||||||| |||| |
|
|
| T |
33996685 |
gcacatttaactgaatctagttggtaggaaatttgacat |
33996723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 34005057 - 34005105
Alignment:
| Q |
205 |
aattattatgtggaaaaggtcaaatggggccgtgttgctattatgaggt |
253 |
Q |
| |
|
|||| ||||| |||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
34005057 |
aattcttatgaggaaaaggtcaaatggggtcatgttggtattatgaggt |
34005105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University