View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10639_low_31 (Length: 242)

Name: NF10639_low_31
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10639_low_31
NF10639_low_31
[»] chr1 (3 HSPs)
chr1 (1-227)||(39618091-39618317)
chr1 (153-218)||(29681737-29681802)
chr1 (153-218)||(48366043-48366108)
[»] chr3 (3 HSPs)
chr3 (1-229)||(35238362-35238589)
chr3 (1-173)||(30500628-30500799)
chr3 (177-227)||(30500559-30500609)
[»] chr7 (6 HSPs)
chr7 (5-220)||(36558554-36558768)
chr7 (1-175)||(2411150-2411323)
chr7 (160-229)||(31174021-31174088)
chr7 (158-220)||(24026519-24026580)
chr7 (195-227)||(2411329-2411361)
chr7 (160-220)||(11469423-11469483)
[»] chr8 (1 HSPs)
chr8 (74-114)||(18231442-18231482)
[»] chr6 (1 HSPs)
chr6 (158-213)||(5122083-5122138)
[»] chr5 (2 HSPs)
chr5 (153-212)||(21361469-21361528)
chr5 (160-213)||(42581014-42581067)
[»] chr4 (2 HSPs)
chr4 (158-220)||(21734368-21734429)
chr4 (159-212)||(23608548-23608601)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39618317 - 39618091
Alignment:
Q  1 tgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataacttattaaccctttattataacaaacccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39618317 tgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataatttattaaccctttattataacaaacccat 39618218  T
Q  101 tattaacactttgaannnnnnngctttacggctaaacaaagtaattagtaaattatagctttaagtgcattttataaagtacattttatgtaattaatag 200  Q
    |||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  39618217 tattaacactttgaattttttttctttacagctaaacaaagtaattagtaaattatagctttaagtgcattttataaagtacattttatgtacgtaatag 39618118  T
Q  201 tcattgtgaatttattttttcttattg 227  Q
    |||||| ||||||||||||||||||||    
T  39618117 tcattgagaatttattttttcttattg 39618091  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 29681737 - 29681802
Alignment:
Q  153 ttatagctttaagtgcattttataaagtacattttatgtaattaatagtcattgtgaatttatttt 218  Q
    |||| |||||||||| ||||||| ||||||||||||| ||| ||||| | ||||||| ||| ||||    
T  29681737 ttattgctttaagtgtattttatgaagtacattttatataagtaatatttattgtgattttttttt 29681802  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 48366108 - 48366043
Alignment:
Q  153 ttatagctttaagtgcattttataaagtacattttatgtaattaatagtcattgtgaatttatttt 218  Q
    |||| |||||||||| ||||||| ||||||||||||| ||| ||||| | ||||||| ||| ||||    
T  48366108 ttattgctttaagtgtattttatgaagtacattttatataagtaatatttattgtgattttttttt 48366043  T

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Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 35238589 - 35238362
Alignment:
Q  1 tgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataacttattaaccctttattataacaaacccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35238589 tgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataatttattaaccctttattataacaaacccat 35238490  T
Q  101 tattaacactttgaannnnnnngctttacggctaaacaaagtaattagtaaattatagctttaagtgcattttataaagtacattttatgtaattaatag 200  Q
    |||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  35238489 tattaacactttgaattttttt-ctttacagctaaacaaagtaattagtaaattatagctttaagtgcattttataaagtacattttatgtacgtaatag 35238391  T
Q  201 tcattgtgaatttattttttcttattgat 229  Q
    |||||| ||||||||||||||||||||||    
T  35238390 tcattgagaatttattttttcttattgat 35238362  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 30500799 - 30500628
Alignment:
Q  1 tgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataacttattaaccctttattataacaaacccat 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  30500799 tgacgacaacaacaatattctataactttctccaacaaaagaaattctatcactattgacccaaacataatttattaaccctttattataacaaacccat 30500700  T
Q  101 tattaacactttgaannnnnnngctttacggctaaacaaagtaattagtaaattatagctttaagtgcatttt 173  Q
    |||||||||||||||        |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30500699 tattaacactttgaattttttt-ctttacagctaaacaaagtaattagtaaattatagctttaagtgcatttt 30500628  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 30500609 - 30500559
Alignment:
Q  177 aagtacattttatgtaattaatagtcattgtgaatttattttttcttattg 227  Q
    |||| |||||||||||  ||||||| |||| ||||||||||||||||||||    
T  30500609 aagtgcattttatgtacgtaatagttattgagaatttattttttcttattg 30500559  T

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Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 36558554 - 36558768
Alignment:
Q  5 gacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataacttattaaccctttattataacaaacccattatt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36558554 gacaacaacaataatctataactttctccaacaaaagaaattctatgactattggcccaaacataatttattaaccctttattataacaaacccattatt 36558653  T
Q  105 aacactttgaannnnnnngctttacggctaaacaaagtaattagtaaattatagctttaagtgcattttataaagtacattttatgtaattaatagtcat 204  Q
    |||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  36558654 aacactttgaattttttt-ctttacagctaaacaaagtaattagtaaattatagctttaagtgcattttataaagtacattttatgtacgtaatagtcat 36558752  T
Q  205 tgtgaatttatttttt 220  Q
    || |||||| ||||||    
T  36558753 tgagaatttttttttt 36558768  T

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Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 2411150 - 2411323
Alignment:
Q  1 tgacgacaacaacaataatctataactttctccaacaaaagaaattctatcactattggcccaaacataacttattaaccctttattataacaaacccat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  2411150 tgacgacaacaacaataatctataactttctccaacaaaaaaaattctatcactattagcccaaacataatttattaaccctttattataacaaacccat 2411249  T
Q  101 tattaacactttgaannnnnnngctttacggctaaacaaagtaattagtaaattatagctttaagtgcattttat 175  Q
    |||||||||||||||        |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2411250 tattaacactttgaattttttt-ctttacagctaaacaaagtaattagtaaattatagctttaagtgcattttat 2411323  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 31174088 - 31174021
Alignment:
Q  160 tttaagtgcattttataaagtacattttatgtaattaatagtcattgtgaatttattttttcttattgat 229  Q
    |||||||| ||||||| ||||||||||||| ||| |||||||  |||||||||  |||||||||||||||    
T  31174088 tttaagtgtattttatgaagtacattttatataagtaatagttgttgtgaatt--ttttttcttattgat 31174021  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 24026580 - 24026519
Alignment:
Q  158 gctttaagtgcattttataaagtacattttatgtaattaatagtcattgtgaatttatttttt 220  Q
    |||||||||| ||||||||||||||||||||| |||  ||||||  ||||| |||||||||||    
T  24026580 gctttaagtgtattttataaagtacattttatataaaaaatagttgttgtg-atttatttttt 24026519  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 2411329 - 2411361
Alignment:
Q  195 taatagtcattgtgaatttattttttcttattg 227  Q
    |||||||||||| ||||||||||||||||||||    
T  2411329 taatagtcattgagaatttattttttcttattg 2411361  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 11469423 - 11469483
Alignment:
Q  160 tttaagtgcattttataaagtacattttatgtaattaatagtcattgtgaatttatttttt 220  Q
    |||||||| ||||||| ||||||||||||| ||  ||||| | ||||||||||| ||||||    
T  11469423 tttaagtgtattttatgaagtacattttatatacgtaatatttattgtgaatttttttttt 11469483  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 18231482 - 18231442
Alignment:
Q  74 attaaccctttattataacaaacccattattaacactttga 114  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  18231482 attaaccctttattataacaaaccctttattaacactttga 18231442  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 5122138 - 5122083
Alignment:
Q  158 gctttaagtgcattttataaagtacattttatgtaattaatagtcattgtgaattt 213  Q
    |||||||||| |||| |||||||||||||| | ||| ||||||| |||||||||||    
T  5122138 gctttaagtgtatttcataaagtacattttgtataaataatagttattgtgaattt 5122083  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 21361469 - 21361528
Alignment:
Q  153 ttatagctttaagtgcattttataaagtacattttatgtaattaatagtcattgtgaatt 212  Q
    |||| |||||||||| ||||||| ||||||||||||| ||| ||||| | ||||||||||    
T  21361469 ttattgctttaagtgtattttatgaagtacattttatataagtaatatttattgtgaatt 21361528  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 42581014 - 42581067
Alignment:
Q  160 tttaagtgcattttataaagtacattttatgtaattaatagtcattgtgaattt 213  Q
    ||||| || ||||||| ||||||||||||||||  ||||||| |||||||||||    
T  42581014 tttaaatgtattttatgaagtacattttatgtacgtaatagttattgtgaattt 42581067  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 21734368 - 21734429
Alignment:
Q  158 gctttaagtgcattttataaagtacattttatgtaattaatagtcattgtgaatttatttttt 220  Q
    |||||||||| ||||||| ||||||||||||| ||| |||||||  ||||| |||||||||||    
T  21734368 gctttaagtgtattttatgaagtacattttatataagtaatagttgttgtg-atttatttttt 21734429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 23608601 - 23608548
Alignment:
Q  159 ctttaagtgcattttataaagtacattttatgtaattaatagtcattgtgaatt 212  Q
    |||||| || ||||||| |||| |||||||| ||||||||||| ||||||||||    
T  23608601 ctttaaatgtattttatgaagtgcattttatataattaatagttattgtgaatt 23608548  T

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