View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_32 (Length: 242)
Name: NF10639_low_32
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 28936000 - 28935787
Alignment:
| Q |
18 |
gttatcatagaaaataccattagttttgtaagcattatgctctgctgtacaatgttcaatcagctgagggcagcagtacttcttcagtgtttcaacatct |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28936000 |
gttatcatagaaaataccattatttttgtaagcattatgctctgctgtacaacgttcaatcagctgagggcagcagtacttcttcagtgtttcaacatct |
28935901 |
T |
|
| Q |
118 |
ccctgtatattcataagtaaaagccaattcataaatcatagatgctgatgcatcagcccgaacaacaaataaatttaatgtaaacataagaagttcttag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28935900 |
ccctgtatattcataagtaaaagccaattcataaatcatagatgctgatgcatcagcccgaataacaaataaatttaatgtaaacataagaagttcttag |
28935801 |
T |
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| Q |
218 |
tgctttatcctttg |
231 |
Q |
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|||||||||||||| |
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| T |
28935800 |
tgctttatcctttg |
28935787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 10189300 - 10189166
Alignment:
| Q |
18 |
gttatcatagaaaataccattagttttgtaagcattatgctctgctgtacaatgttcaatcagctgagggcagcagtacttcttcagtgtttcaacatct |
117 |
Q |
| |
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|||||||||||| |||||| | ||| |||||| |||||| ||| |||| ||||||||||||||||| ||||||||||||| |||||||| |||| |
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| T |
10189300 |
gttatcatagaagataccacgatctttataagcaccatgctcggctttacagcgttcaatcagctgaggggcacagtacttcttcaatgtttcaaaatct |
10189201 |
T |
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| Q |
118 |
ccctgtatattcataagtaaaagccaattcataaa |
152 |
Q |
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|||||||| || | ||||||||||||||||||||| |
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| T |
10189200 |
ccctgtatgtttacaagtaaaagccaattcataaa |
10189166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 35118456 - 35118590
Alignment:
| Q |
18 |
gttatcatagaaaataccattagttttgtaagcattatgctctgctgtacaatgttcaatcagctgagggcagcagtacttcttcagtgtttcaacatct |
117 |
Q |
| |
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||||||| |||| ||||||| |||| |||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35118456 |
gttatcaaagaagataccatggcttttataagcaccatgctctgctttacagcgttcaatcagctgaggcgagcagtacttcttcagtgtttcaacatct |
35118555 |
T |
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| Q |
118 |
ccctgtatattcataagtaaaagccaattcataaa |
152 |
Q |
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|||||||| || | ||||||||||||||||||||| |
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| T |
35118556 |
ccctgtatgtttacaagtaaaagccaattcataaa |
35118590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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