View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10639_low_33 (Length: 239)

Name: NF10639_low_33
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10639_low_33
NF10639_low_33
[»] chr8 (4 HSPs)
chr8 (1-223)||(9841384-9841606)
chr8 (18-92)||(9846480-9846554)
chr8 (18-137)||(9902354-9902473)
chr8 (23-137)||(9859859-9859973)
[»] chr3 (2 HSPs)
chr3 (24-200)||(7256257-7256436)
chr3 (21-95)||(49388127-49388201)
[»] chr1 (3 HSPs)
chr1 (19-207)||(5054678-5054866)
chr1 (22-131)||(46445409-46445518)
chr1 (22-137)||(46672643-46672761)
[»] chr5 (3 HSPs)
chr5 (17-133)||(39571765-39571881)
chr5 (17-133)||(39575771-39575887)
chr5 (23-134)||(2326898-2327009)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9841384 - 9841606
Alignment:
Q  1 aaaatttcacaacaacaagtagttcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgatttgggaacacctcaaaaactagg 100  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  9841384 aaaattgcaccacaacaagtagttcttatttcttggaatttaaagatgatgtgaatgaccaatttgaaaggactgatttaggaacacctcaaaaactagg 9841483  T
Q  101 atatgtaatcggtagttgtgatggcatattgctgcttatgagtatggctaggcaaatttcggtcgtgaaccctatcctcaagtgctggcttagatttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9841484 atatgtaatcggtagttgtgatggcatattgctgcttatgagtatggctaggcaaatttcggtcgtgaaccctatcctcaagtgctggcttagatttcct 9841583  T
Q  201 cgttttctttctcagcatcatat 223  Q
    ||||||||||||||| |||||||    
T  9841584 cgttttctttctcaggatcatat 9841606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 9846480 - 9846554
Alignment:
Q  18 agtagttcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgatttgggaacacctcaa 92  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  9846480 agtagttcttatttcttggaatttaaagatgatgtgaatgaccaatttgaaaggactgatttgggaacacctcaa 9846554  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 9902354 - 9902473
Alignment:
Q  18 agtagttcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgatttgggaacacctcaaaaactaggatatgtaatcggtagtt 117  Q
    |||||||||||||| ||||||||||||||||  | ||||| || ||||||||||||| ||||||||| ||||||| || | ||| || ||||  ||| |     
T  9902354 agtagttcttattttttggaatttaaagatggggtgaatggccaatttgaaaggactaatttgggaatacctcaagaaatgggagatataatttgtactc 9902453  T
Q  118 gtgatggcatattgctgctt 137  Q
    |||||||||||||| |||||    
T  9902454 gtgatggcatattgttgctt 9902473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 9859859 - 9859973
Alignment:
Q  23 ttcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgattt---gggaacacctcaaaaactaggatatgtaatcggtagttgt 119  Q
    |||||||||||||||||||||   ||||  ||| | || ||||||||||||| ||||   ||||||||||||||   | ||| || ||||||||| ||||    
T  9859859 ttcttatttcttggaatttaa---tgattcgaacggccaatttgaaaggacttatttcttgggaacacctcaaaggatgggagatataatcggtacttgt 9859955  T
Q  120 gatggcatattgctgctt 137  Q
    |||||| |||||||||||    
T  9859956 gatggcttattgctgctt 9859973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 7256257 - 7256436
Alignment:
Q  24 tcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgatttgggaacacctcaaaaactaggatatgtaatcggtagttgtgatg 123  Q
    ||||||||||||||||||||||||  ||  |||| ||  ||||||||||||||||||||||||||||||||| | ||| ||||| |||||| |||| |||    
T  7256257 tcttatttcttggaatttaaagatagtgtcaatggccactttgaaaggactgatttgggaacacctcaaaaaatgggacatgtagtcggtacttgttatg 7256356  T
Q  124 gcatattgctgcttat---gagtatggctaggcaaatttcggtcgtgaaccctatcctcaagtgctggcttagatttcct 200  Q
    | ||||||||||| ||   ||| ||  |||  |||||||  ||||||||||| ||||||||||| ||||||||| |||||    
T  7256357 gtatattgctgctaatttcgagaattactaaacaaatttatgtcgtgaaccccatcctcaagtgttggcttagaattcct 7256436  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 49388201 - 49388127
Alignment:
Q  21 agttcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgatttgggaacacctcaaaaa 95  Q
    |||||||||||||||||||| |||||||||  ||||| || |||||||| |||||||||||||||| ||||||||    
T  49388201 agttcttatttcttggaattcaaagatgatttgaatggccaatttgaaaagactgatttgggaacatctcaaaaa 49388127  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 5054866 - 5054678
Alignment:
Q  19 gtagttcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgatttgggaacacctcaaaaactaggatatgtaatcggtagttg 118  Q
    |||||||||||||||||||||| |||||  ||| ||||| || ||||||||||  ||| |||||||||||||  |||  || | || ||||| ||| |||    
T  5054866 gtagttcttatttcttggaattcaaagacaatgtgaatggccaatttgaaaggtatgaattgggaacacctcgtaaaacagaacatctaatcagtacttg 5054767  T
Q  119 tgatggcatattgctgcttatgagtatggctaggcaaatttcggtcgtgaaccctatcctcaagtgctggcttagatttcctcgttttc 207  Q
    |||||| |||||||||||| |||||||  || | ||||| |  ||||  ||||| ||||||||| || || ||||| |||||| |||||    
T  5054766 tgatggtatattgctgcttttgagtatttctggacaaatcttcgtcgcaaaccccatcctcaagcgcgggtttagaattcctccttttc 5054678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 46445409 - 46445518
Alignment:
Q  22 gttcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgatttgggaacacctcaaaaactaggatatgtaatcggtagttgtga 121  Q
    |||||||||||||||||||||| ||||||| ||| | || ||||||||||  |||||| |||| |||| |||| || |||||| ||||  ||| ||||||    
T  46445409 gttcttatttcttggaatttaatgatgatgtgaacggccaatttgaaaggtttgattttggaatacctgaaaatctgggatatataattagtacttgtga 46445508  T
Q  122 tggcatattg 131  Q
    |||| |||||    
T  46445509 tggcttattg 46445518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 46672761 - 46672643
Alignment:
Q  22 gttcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgatttgggaacacc---tcaaaaactaggatatgtaatcggtagttg 118  Q
    |||||||||||||||| |||||||| |||| |||||  | |||||||||| || ||||||||| |||   | ||||||| ||||||  |||| ||| |||    
T  46672761 gttcttatttcttggagtttaaagacgatgtgaatggtcaatttgaaaggcctaatttgggaatacctaatgaaaaactgggatataaaatcagtacttg 46672662  T
Q  119 tgatggcatattgctgctt 137  Q
    ||||||||||||| |||||    
T  46672661 tgatggcatattgttgctt 46672643  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 39571765 - 39571881
Alignment:
Q  17 aagtagttcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgatttgggaacacctcaaaaactaggatatgtaatcggtagt 116  Q
    |||||||||||||||||||||  |||||||||||  ||||   | ||||||||||| |||||||| ||||||||||| | | ||  || ||||| ||| |    
T  39571765 aagtagttcttatttcttggatattaaagatgatatgaataggcaatttgaaaggattgatttggaaacacctcaaacaatgggggatttaatcagtact 39571864  T
Q  117 tgtgatggcatattgct 133  Q
    |||||||||||||||||    
T  39571865 tgtgatggcatattgct 39571881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 39575771 - 39575887
Alignment:
Q  17 aagtagttcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgatttgggaacacctcaaaaactaggatatgtaatcggtagt 116  Q
    ||||||||| |||||||||||  |||||||||||  || ||  | ||||||||||| ||||||||||||||| |||| | | ||| || ||||| ||| |    
T  39575771 aagtagttcctatttcttggatattaaagatgatatgagtggtcaatttgaaaggattgatttgggaacaccccaaacaatgggagatttaatcagtact 39575870  T
Q  117 tgtgatggcatattgct 133  Q
    |||||||||||||||||    
T  39575871 tgtgatggcatattgct 39575887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 2327009 - 2326898
Alignment:
Q  23 ttcttatttcttggaatttaaagatgatgagaatgacctatttgaaaggactgatttgggaacacctcaaaaactaggatatgtaatcggtagttgtgat 122  Q
    ||||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||| |||| ||||  || | | ||| || |||||| || |||| ||    
T  2327009 ttcttatttcttggaatttaaagattatgtgaacgaccaatttgaaaggactgatttaggaataccttcaataatgggagatataatcgatacttgtaat 2326910  T
Q  123 ggcatattgctg 134  Q
    || |||||||||    
T  2326909 ggtatattgctg 2326898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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