View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10639_low_34 (Length: 238)

Name: NF10639_low_34
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10639_low_34
NF10639_low_34
[»] chr3 (23 HSPs)
chr3 (122-231)||(47371199-47371308)
chr3 (1-104)||(8400883-8400986)
chr3 (1-104)||(50823726-50823829)
chr3 (1-104)||(50852031-50852134)
chr3 (1-104)||(7417826-7417929)
chr3 (3-104)||(35198795-35198896)
chr3 (1-104)||(22855915-22856018)
chr3 (2-104)||(22371730-22371832)
chr3 (1-102)||(34824584-34824685)
chr3 (20-104)||(37330608-37330692)
chr3 (7-102)||(55468033-55468129)
chr3 (1-104)||(52545349-52545452)
chr3 (1-102)||(43334057-43334158)
chr3 (20-104)||(30534903-30534987)
chr3 (1-113)||(29635896-29636009)
chr3 (2-104)||(19872484-19872586)
chr3 (20-104)||(37454745-37454829)
chr3 (1-63)||(48077983-48078045)
chr3 (33-113)||(25910658-25910738)
chr3 (1-101)||(42876243-42876343)
chr3 (5-56)||(25589253-25589304)
chr3 (12-102)||(30203657-30203744)
chr3 (81-113)||(358934-358966)
[»] chr7 (16 HSPs)
chr7 (1-113)||(38265229-38265341)
chr7 (1-113)||(35109719-35109831)
chr7 (1-104)||(37095211-37095314)
chr7 (1-104)||(34721862-34721965)
chr7 (3-104)||(21577099-21577200)
chr7 (1-102)||(38405157-38405258)
chr7 (1-102)||(16059356-16059457)
chr7 (1-101)||(41151200-41151301)
chr7 (1-104)||(245265-245368)
chr7 (1-101)||(12472149-12472249)
chr7 (1-113)||(45278480-45278592)
chr7 (1-102)||(18116947-18117048)
chr7 (1-100)||(11216797-11216896)
chr7 (5-104)||(28407540-28407635)
chr7 (1-102)||(48176427-48176529)
chr7 (3-104)||(23028713-23028814)
[»] chr6 (8 HSPs)
chr6 (1-113)||(20685353-20685465)
chr6 (3-104)||(35163751-35163852)
chr6 (1-104)||(19686828-19686931)
chr6 (1-104)||(17948708-17948811)
chr6 (1-102)||(15070153-15070254)
chr6 (1-104)||(2711741-2711838)
chr6 (1-96)||(14505533-14505627)
chr6 (5-76)||(24336647-24336718)
[»] chr1 (16 HSPs)
chr1 (1-113)||(30370052-30370164)
chr1 (1-112)||(22024131-22024242)
chr1 (1-102)||(30054445-30054546)
chr1 (1-104)||(45324034-45324137)
chr1 (2-104)||(14498080-14498182)
chr1 (1-113)||(12025209-12025321)
chr1 (1-105)||(30850840-30850944)
chr1 (5-104)||(20014490-20014589)
chr1 (6-104)||(4573412-4573510)
chr1 (1-102)||(21090143-21090244)
chr1 (1-113)||(33762532-33762644)
chr1 (17-96)||(35371754-35371833)
chr1 (1-113)||(33763246-33763358)
chr1 (32-102)||(35618034-35618104)
chr1 (45-113)||(17015192-17015260)
chr1 (3-102)||(44438553-44438652)
[»] chr2 (24 HSPs)
chr2 (1-104)||(45136971-45137074)
chr2 (1-104)||(17136415-17136518)
chr2 (2-104)||(36836330-36836432)
chr2 (3-104)||(2754052-2754153)
chr2 (1-104)||(25987662-25987766)
chr2 (1-104)||(36380133-36380236)
chr2 (1-104)||(40156068-40156171)
chr2 (1-104)||(44650421-44650524)
chr2 (1-113)||(21637925-21638037)
chr2 (1-96)||(6672802-6672897)
chr2 (1-104)||(10745233-10745336)
chr2 (1-104)||(558440-558543)
chr2 (1-104)||(26690182-26690285)
chr2 (1-103)||(30372682-30372784)
chr2 (1-113)||(5039448-5039560)
chr2 (6-104)||(13047157-13047252)
chr2 (5-104)||(2357077-2357175)
chr2 (1-104)||(3200909-3201012)
chr2 (1-104)||(33066618-33066721)
chr2 (6-104)||(21487181-21487280)
chr2 (1-104)||(7860147-7860250)
chr2 (56-104)||(2098827-2098875)
chr2 (7-102)||(4553561-4553657)
chr2 (11-51)||(30477240-30477280)
[»] chr8 (20 HSPs)
chr8 (1-102)||(17095578-17095679)
chr8 (1-113)||(11404029-11404141)
chr8 (1-113)||(19723339-19723451)
chr8 (1-104)||(32296640-32296743)
chr8 (3-104)||(22711539-22711640)
chr8 (6-104)||(36261679-36261777)
chr8 (1-102)||(28739564-28739665)
chr8 (1-113)||(29767216-29767326)
chr8 (1-104)||(4840168-4840271)
chr8 (6-101)||(43288105-43288200)
chr8 (2-85)||(21355004-21355087)
chr8 (6-113)||(41553318-41553425)
chr8 (1-65)||(24475036-24475100)
chr8 (19-102)||(11909426-11909509)
chr8 (2-104)||(30682868-30682969)
chr8 (1-104)||(11610308-11610411)
chr8 (1-49)||(27881044-27881092)
chr8 (1-49)||(28021225-28021273)
chr8 (45-104)||(27879561-27879620)
chr8 (45-104)||(28019742-28019801)
[»] chr4 (23 HSPs)
chr4 (1-102)||(51066521-51066622)
chr4 (1-102)||(46494401-46494502)
chr4 (1-104)||(7173586-7173689)
chr4 (1-104)||(36192569-36192672)
chr4 (1-104)||(51713966-51714069)
chr4 (2-104)||(29576444-29576546)
chr4 (1-113)||(55231715-55231827)
chr4 (1-104)||(30970385-30970488)
chr4 (1-101)||(32139192-32139292)
chr4 (1-104)||(50905776-50905879)
chr4 (1-75)||(8740476-8740550)
chr4 (1-104)||(39863779-39863882)
chr4 (11-104)||(676766-676859)
chr4 (2-113)||(2570230-2570341)
chr4 (29-104)||(22304092-22304167)
chr4 (1-104)||(47626994-47627097)
chr4 (6-113)||(4080544-4080651)
chr4 (1-63)||(41523425-41523487)
chr4 (11-103)||(51279035-51279127)
chr4 (5-76)||(22423408-22423479)
chr4 (1-102)||(2294719-2294814)
chr4 (8-53)||(50399694-50399739)
chr4 (52-97)||(28202598-28202643)
[»] chr5 (7 HSPs)
chr5 (1-113)||(17064351-17064463)
chr5 (1-102)||(20983006-20983107)
chr5 (21-104)||(37976598-37976681)
chr5 (14-104)||(41910865-41910955)
chr5 (6-100)||(31673863-31673956)
chr5 (1-104)||(5009418-5009520)
chr5 (6-65)||(18303350-18303409)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-96)||(107700-107795)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-63)||(7011-7073)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 47371199 - 47371308
Alignment:
Q  122 gtttataacatgttgataatatgtacaaatttgaaataaatctaaatttatttgatatagtgttgagatctatcaaaattaacgttttaaaatcttttat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47371199 gtttataacatgttgataatatgtacaaatttgaaataaatctaaatttatttgatatagtgttgagatctatcaaacttaacgttttaaaatcttttat 47371298  T
Q  222 ttgatgatgt 231  Q
    || |||||||    
T  47371299 tttatgatgt 47371308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 8400883 - 8400986
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  8400883 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 8400982  T
Q  101 aatt 104  Q
    ||||    
T  8400983 aatt 8400986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 50823726 - 50823829
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  50823726 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 50823825  T
Q  101 aatt 104  Q
    ||||    
T  50823826 aatt 50823829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 50852134 - 50852031
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  50852134 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 50852035  T
Q  101 aatt 104  Q
    ||||    
T  50852034 aatt 50852031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 7417826 - 7417929
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||| ||||||||||||||||||||    
T  7417826 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcactgccttggactggggcaccatcccctcaccctaa 7417925  T
Q  101 aatt 104  Q
    ||||    
T  7417926 aatt 7417929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 35198795 - 35198896
Alignment:
Q  3 tgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  35198795 tgcctttgcagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaaa 35198894  T
Q  103 tt 104  Q
    ||    
T  35198895 tt 35198896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 22855915 - 22856018
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||| ||||||||||||||||||||||||||||||    
T  22855915 agtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttaagcccaaaggtcttccctgccttggactggagcaccatcccctcaccctaa 22856014  T
Q  101 aatt 104  Q
    ||||    
T  22856015 aatt 22856018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 22371832 - 22371730
Alignment:
Q  2 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| | |||||| |||||| |||||||||||||||||||||    
T  22371832 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgctttagactggggcaccatcccctcaccctaaa 22371733  T
Q  102 att 104  Q
    |||    
T  22371732 att 22371730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 34824584 - 34824685
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |  || ||||||||| ||||||||||||||||||||    
T  34824584 agtgcctttgaagggaggtaaatgtaattatctttgtaagtgctctttgatcccgaaggtcttcccggccttggactggggcaccatcccctcaccctaa 34824683  T
Q  101 aa 102  Q
    ||    
T  34824684 aa 34824685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 37330692 - 37330608
Alignment:
Q  20 aaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    |||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||| ||||||||||||||||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 37330608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 55468033 - 55468129
Alignment:
Q  7 tttggagggaggtaaatgtaattacctttgtaagtgctctttgag-cccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||   ||| ||||||||| ||||||||||||||||||||||    
T  55468033 tttggagggaggtaaatgtaaatacctttgtaagtgctctttgagccccgaaggtcttctctgccttggactggggcaccatcccctcaccctaaaa 55468129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 52545349 - 52545452
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||  |||||||||||||||| ||| |||||||||  |||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  52545349 agtgcctttaaagggaggtaaatgtaaatacttttgtaagtagtctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 52545448  T
Q  101 aatt 104  Q
    ||||    
T  52545449 aatt 52545452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 43334158 - 43334057
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||| ||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||||| | ||| ||||||||| | ||||||||||||||||||    
T  43334158 agtgtcttgggagggaggtaaatgtaaatacttttgtaagtgctatttgagcccgaaggtcttccctgccttggactggggtaccatcccctcaccctaa 43334059  T
Q  101 aa 102  Q
    ||    
T  43334058 aa 43334057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 30534987 - 30534903
Alignment:
Q  20 aaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||| | ||||||||||||||||||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggtaccatcccctcaccctaaaatt 30534903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 29635896 - 29636009
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcacc-atcccctcacccta 99  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||| ||||| ||| ||||| || ||||||| |||    
T  29635896 agtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgccttggagtggggcaccaattccctcacgcta 29635995  T
Q  100 aaattaatgtaacc 113  Q
    |||||  |||||||    
T  29635996 aaatttctgtaacc 29636009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 19872586 - 19872484
Alignment:
Q  2 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaa 101  Q
    ||||||||||||| |||||||  ||||||||||||||||| ||||||||  ||||||||||| | ||  ||||||||| |||||||||||||| ||||||    
T  19872586 gtgcctttggaggaaggtaaaattaattacctttgtaagtactctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctcatcctaaa 19872487  T
Q  102 att 104  Q
    |||    
T  19872486 att 19872484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 37454829 - 37454745
Alignment:
Q  20 aaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||| | | | || || ||| ||||||||||||||||||||||||    
T  37454829 aaatataattacctttgtaagtgctctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcaccctaaaatt 37454745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 48078045 - 48077983
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctt 63  Q
    |||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||||||    
T  48078045 agtgcctttggaggaaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtctt 48077983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 25910738 - 25910658
Alignment:
Q  33 tttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaacc 113  Q
    ||||||||||||||||||| |||||| |||| | ||| ||||||||  ||||||||||||||||||||||||  |||||||    
T  25910738 tttgtaagtgctctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcaccctaaaatttttgtaacc 25910658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 42876243 - 42876343
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||| |||| || ||||||||||||||||||||||||||||||||||||| |  ||| ||||| | |   ||||||| | ||||||||| ||||||||||    
T  42876243 agtgtctttagatggaggtaaatgtaattacctttgtaagtgctctttgaacttgaatgtcttccctatcttggactagggcaccatcctctcaccctaa 42876342  T
Q  101 a 101  Q
    |    
T  42876343 a 42876343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 25589253 - 25589304
Alignment:
Q  5 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccga 56  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||| ||||    
T  25589253 cctttggaaggaggtaaatgtaaataccttagtaagtgctctttgagtccga 25589304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 30203744 - 30203657
Alignment:
Q  12 agggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    ||||||||||||||||  |||||||||| || ||||||||| ||||||| |||| ||  ||| ||||| ||||||||||||||| ||||||    
T  30203744 agggaggtaaatgtaa--acctttgtaaatgttctttgagctcgaaggt-tttcctgtcttgaactggggcaccatcccctcactctaaaa 30203657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 358966 - 358934
Alignment:
Q  81 gcaccatcccctcaccctaaaattaatgtaacc 113  Q
    |||||||||||||||||||||||| ||||||||    
T  358966 gcaccatcccctcaccctaaaatttatgtaacc 358934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 38265341 - 38265229
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  38265341 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 38265242  T
Q  101 aattaatgtaacc 113  Q
    |||| ||||||||    
T  38265241 aatttatgtaacc 38265229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 35109719 - 35109831
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  35109719 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 35109818  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  35109819 aatttttgtaacc 35109831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 37095314 - 37095211
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  37095314 agtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 37095215  T
Q  101 aatt 104  Q
    ||||    
T  37095214 aatt 37095211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 34721862 - 34721965
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||| | ||||||||||||||||||||    
T  34721862 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggacttccctgccttggactcgggcaccatcccctcaccctaa 34721961  T
Q  101 aatt 104  Q
    ||||    
T  34721962 aatt 34721965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 21577200 - 21577099
Alignment:
Q  3 tgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | ||| ||||||||| ||||||||||||||||||||||    
T  21577200 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 21577101  T
Q  103 tt 104  Q
    ||    
T  21577100 tt 21577099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 38405258 - 38405157
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  38405258 agtgcctttggagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 38405159  T
Q  101 aa 102  Q
    ||    
T  38405158 aa 38405157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 16059457 - 16059356
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | | | ||||||||| ||||||||||||||||||||    
T  16059457 agtgcctttgcagggaggtaaatgtaattacctttgtaagtgctctctgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaa 16059358  T
Q  101 aa 102  Q
    ||    
T  16059357 aa 16059356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41151200 - 41151301
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattaccttt-gtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcacccta 99  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||    
T  41151200 agtgtctttggagggaggtaaatgtaattaccttttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacccta 41151299  T
Q  100 aa 101  Q
    ||    
T  41151300 aa 41151301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 245368 - 245265
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  245368 agtgcccttggagggaggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 245269  T
Q  101 aatt 104  Q
    ||||    
T  245268 aatt 245265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 12472149 - 12472249
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | ||  ||||||||| | ||||||||||||||||||    
T  12472149 agtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccctgtcttggactggggtaccatcccctcaccctaa 12472248  T
Q  101 a 101  Q
    |    
T  12472249 a 12472249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 45278480 - 45278592
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||||||| | |||||| ||||| | ||| ||||||||||||||||||||||||||||||    
T  45278480 agtgcctttgaagggaagtaaatgtaattatctttgtaagtgctctttaaacccgaatgtcttccctgccttggactggagcaccatcccctcaccctaa 45278579  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  45278580 aatttttgtaacc 45278592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 18117048 - 18116947
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||  ||||| |||| | ||| ||||||||| ||||||||||||||||||||    
T  18117048 agtgcctttagagggaggtaaatgtaattacctttgtaggtgctctttgaggtcgaagatcttccctgccttggactggggcaccatcccctcaccctaa 18116949  T
Q  101 aa 102  Q
    ||    
T  18116948 aa 18116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 11216797 - 11216896
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   | ||||||||| | ||| ||| ||||||||||||    
T  11216797 agtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttctctactttggactagggcatcattccctcaccctaa 11216896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 28407540 - 28407635
Alignment:
Q  5 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||    | || ||||| ||| ||||||||||||||||||||||||    
T  28407540 cctttagagggaggtaaatgtaaatacttttgtaagtgctctttgagcccgaaggtc----aagccttggattggggcaccatcccctcaccctaaaatt 28407635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 48176427 - 48176529
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcat-gctttggactggagcaccatcccctcacccta 99  Q
    |||||||||||| |||||||||||||| ||| |||||||||| | |||||||| |||||| || | |  | ||||||||| |||||||||||||||||||    
T  48176427 agtgcctttggaaggaggtaaatgtaaatacttttgtaagtgttttttgagccggaaggttttccctccccttggactggggcaccatcccctcacccta 48176526  T
Q  100 aaa 102  Q
    |||    
T  48176527 aaa 48176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 23028713 - 23028814
Alignment:
Q  3 tgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    ||||||| |||||| |||||||||||||||||| |||||| | ||||| |||||||| ||| | | | || |||||   |||||||| |||| |||||||    
T  23028713 tgcctttagagggatgtaaatgtaattacctttataagtgttttttgaacccgaaggccttccctaccttagactgagacaccatcctctcatcctaaaa 23028812  T
Q  103 tt 104  Q
    ||    
T  23028813 tt 23028814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 20685353 - 20685465
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||| |||||||||    
T  20685353 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcaccctaa 20685452  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  20685453 aatttttgtaacc 20685465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 35163852 - 35163751
Alignment:
Q  3 tgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||    
T  35163852 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 35163753  T
Q  103 tt 104  Q
    ||    
T  35163752 tt 35163751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 19686931 - 19686828
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | || |||||| ||| ||||||||||||||||    
T  19686931 agtgcctttgtagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatctttcctcccttagactggggcatcatcccctcaccctaa 19686832  T
Q  101 aatt 104  Q
    ||||    
T  19686831 aatt 19686828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 17948708 - 17948811
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| | ||  |||||||||  ||||||||||||||| |||    
T  17948708 agtgtctttggagagaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctcaccttaa 17948807  T
Q  101 aatt 104  Q
    ||||    
T  17948808 aatt 17948811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 15070153 - 15070254
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||||||| | ||| || |||||| ||||||||||||||||| ||    
T  15070153 agtgcctttggagggaggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgccttagactggggcaccatcccctcacccaaa 15070252  T
Q  101 aa 102  Q
    ||    
T  15070253 aa 15070254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 2711838 - 2711741
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||| |||||      |||||||||||||||||||    
T  2711838 agtgcttttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgccttgga------caccatcccctcaccctaa 2711745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 14505627 - 14505533
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcacc 96  Q
    ||||| |||||||||||||||||||||| |||||||||| |  |||||| || ||||| |||| | ||| ||||||||| ||||||||||||||||    
T  14505627 agtgcttttggagggaggtaaatgtaat-acctttgtaaatattctttgggcgcgaagatcttccgtgccttggactggggcaccatcccctcacc 14505533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 24336647 - 24336718
Alignment:
Q  5 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggac 76  Q
    ||||||||||||||||||||||| ||| |||||||||| | |||||||| |||| |||| | ||| ||||||    
T  24336647 cctttggagggaggtaaatgtaaatacttttgtaagtgttttttgagcctgaagatcttccctgccttggac 24336718  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 30370164 - 30370052
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||| |||    
T  30370164 agtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccttaa 30370065  T
Q  101 aattaatgtaacc 113  Q
    |||| ||||||||    
T  30370064 aattcatgtaacc 30370052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 22024131 - 22024242
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||| ||||||||||||||||||||    
T  22024131 agtgcctttggatggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgccttggactggggcaccatcccctcaccctaa 22024230  T
Q  101 aattaatgtaac 112  Q
    |||| |||||||    
T  22024231 aatttatgtaac 22024242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 30054546 - 30054445
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  30054546 agtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 30054447  T
Q  101 aa 102  Q
    ||    
T  30054446 aa 30054445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 45324034 - 45324137
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  45324034 agtgcttttggagggaggtaaatgtaaatacctttgtaagtgctccttgagcccgaaggtcttccctgctttggactggggcaccatcccctcaccctaa 45324133  T
Q  101 aatt 104  Q
    ||||    
T  45324134 aatt 45324137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 14498182 - 14498080
Alignment:
Q  2 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||| ||||||||| || ||||||||||||||||||    
T  14498182 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcaccctaaa 14498083  T
Q  102 att 104  Q
    |||    
T  14498082 att 14498080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 12025209 - 12025321
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||| | ||| ||||||||| |||||| |||||||||||||    
T  12025209 agtgcctttggaggaaggtaaatgtaattacctttgtaagtactatttgagcccgaaggtcttccctgccttggactggggcaccaccccctcaccctaa 12025308  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  12025309 aatttttgtaacc 12025321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 30850944 - 30850840
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||  ||||||||| ||||||||||||||||||||    
T  30850944 agtgtctttggagggaggtaaatataattgcctttgtaagtgctctttgaacccgaaggtctttcctgtcttggactggggcaccatcccctcaccctaa 30850845  T
Q  101 aatta 105  Q
    |||||    
T  30850844 aatta 30850840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 20014490 - 20014589
Alignment:
Q  5 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| | ||| ||||||||  ||||||||||||||||||||||||    
T  20014490 cctttggagggaggtaaatgtaattacatttgtaaatgctctttgagcctgaaggtcttccctgccttggactgaggcaccatcccctcaccctaaaatt 20014589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 4573412 - 4573510
Alignment:
Q  6 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | || |||||||||  |||| |||||||||||||||||||    
T  4573412 ctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgttttggactgaggcactatcccctcaccctaaaatt 4573510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 21090143 - 21090244
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||| ||||    
T  21090143 agtgccgttggagggaggtaaatgtaaatacatttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcactctaa 21090242  T
Q  101 aa 102  Q
    ||    
T  21090243 aa 21090244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 33762644 - 33762532
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| || || | ||| ||||||||| ||| ||||||||||||||||    
T  33762644 agtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttggactggggcatcatcccctcaccctaa 33762545  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  33762544 aatttttgtaacc 33762532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 35371833 - 35371754
Alignment:
Q  17 ggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcacc 96  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||| ||||||||||||||||    
T  35371833 ggtaaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgccttggactggggcaccatcccctcacc 35371754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 33763358 - 33763246
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| || || | ||| ||| ||||| ||| ||||||||||||||||    
T  33763358 agtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttgaactggggcatcatcccctcaccctaa 33763259  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  33763258 aatttctgtaacc 33763246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 35618034 - 35618104
Alignment:
Q  32 ctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||    
T  35618034 ctttgtaagtgctctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcaccctaaaa 35618104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 17015192 - 17015260
Alignment:
Q  45 ctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaattaatgtaacc 113  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||||| ||||||||| ||||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttggactggggcaccatcccctcatcctaaaatttatgtaacc 17015260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 44438652 - 44438553
Alignment:
Q  3 tgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| |   |||||||||| | ||| ||| ||||| | ||||||||||| || |||||    
T  44438652 tgcctttggagggaggtaaatgtaattacttttgtaagtgttctttaaattcgaaggtcttccctgccttgaactggggtaccatcccctcgccttaaaa 44438553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 45137074 - 45136971
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||| |||||||||    
T  45137074 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcaccctaa 45136975  T
Q  101 aatt 104  Q
    ||||    
T  45136974 aatt 45136971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 17136415 - 17136518
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |  || ||||||||| ||||||||||||||||||||    
T  17136415 agtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccccgccttggactggggcaccatcccctcaccctaa 17136514  T
Q  101 aatt 104  Q
    ||||    
T  17136515 aatt 17136518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 104
Target Start/End: Complemental strand, 36836432 - 36836330
Alignment:
Q  2 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||| |||||||||||||||| ||||    
T  36836432 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggcaccatcccctcaccttaaa 36836333  T
Q  102 att 104  Q
    |||    
T  36836332 att 36836330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 2754153 - 2754052
Alignment:
Q  3 tgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||| ||||||||| ||||||||||||||||||||||    
T  2754153 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 2754054  T
Q  103 tt 104  Q
    ||    
T  2754053 tt 2754052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 25987766 - 25987662
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttt-catgctttggactggagcaccatcccctcacccta 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||| |||| |||||||||||||||||||    
T  25987766 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaaggtctttccctgccttggtctggggcaccatcccctcacccta 25987667  T
Q  100 aaatt 104  Q
    |||||    
T  25987666 aaatt 25987662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 36380236 - 36380133
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | | ||||||||  ||||||||||||||||||||    
T  36380236 agtgcctttggagggaggtaaatgtaattccctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgaggcaccatcccctcaccctaa 36380137  T
Q  101 aatt 104  Q
    ||||    
T  36380136 aatt 36380133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 40156068 - 40156171
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||| ||||| |||||||||||||||| |||    
T  40156068 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctaccttgaactggggcaccatcccctcaccataa 40156167  T
Q  101 aatt 104  Q
    ||||    
T  40156168 aatt 40156171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 44650421 - 44650524
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||| |||||| || ||||||||||||||||||||    
T  44650421 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagtccgaagatcttccctgccttggaccggggcaccatcccctcaccctaa 44650520  T
Q  101 aatt 104  Q
    ||||    
T  44650521 aatt 44650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 21637925 - 21638037
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||   ||| ||||||| | ||||||||||||||||||||    
T  21637925 agtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccaaaggtcttctctgccttggactagggcaccatcccctcaccctaa 21638024  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  21638025 aatttttgtaacc 21638037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 6672897 - 6672802
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcacc 96  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||    
T  6672897 agtgcctttggagggaggtaaatgtaattacctttgtacgcgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 6672802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10745336 - 10745233
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| || | ||| ||||||||| ||||||||||||||||||||    
T  10745336 agtgcctttagagggaggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtattccctgccttggactggggcaccatcccctcaccctaa 10745237  T
Q  101 aatt 104  Q
    ||||    
T  10745236 aatt 10745233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 558543 - 558440
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||| | | | ||||| ||| ||||||||||||||||||||    
T  558543 agtgcctttggagggaggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttcccttccttggaatggggcaccatcccctcaccctaa 558444  T
Q  101 aatt 104  Q
    ||||    
T  558443 aatt 558440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26690182 - 26690285
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| |  |||||||||| | ||| ||||||||  ||||||||||||||||||||    
T  26690182 agtgcttttggagggaggtaaatgtaattacctttgtaagtgatctttgtgttcgaaggtcttccctgccttggactgaggcaccatcccctcaccctaa 26690281  T
Q  101 aatt 104  Q
    ||||    
T  26690282 aatt 26690285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 30372784 - 30372682
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||||| ||||| ||| ||||| | ||||| ||||||||||||    
T  30372784 agtgcctttggaaggaggtaaatgtaaatatctttgttagtgctctttgagcccgaaggtcttccatgccttgaactggggtaccataccctcaccctaa 30372685  T
Q  101 aat 103  Q
    |||    
T  30372684 aat 30372682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 5039448 - 5039560
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| | | | ||||||| | ||||||||||||||| ||||    
T  5039448 agtgcttttagagggaggtaaacgtaattacctttgtaagtgctctttgagcccgaagatcttccctaccttggactagggcaccatcccctcactctaa 5039547  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  5039548 aatttttgtaacc 5039560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 13047252 - 13047157
Alignment:
Q  6 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    |||||||||||||||||| ||||||||||   ||||||||||||||||| ||| |||| | ||| ||||||||||||||||||||||||||||||||||    
T  13047252 ctttggagggaggtaaatataattacctt---aagtgctctttgagcccaaagatcttccctgccttggactggagcaccatcccctcaccctaaaatt 13047157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 2357175 - 2357077
Alignment:
Q  5 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    ||||||||||||||||||||||| |||| |||||| |||| ||||||  |||||||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  2357175 cctttggagggaggtaaatgtaaataccattgtaaatgct-tttgagttcgaaggtcttccatgccttggactggggcaccatcccctcaccctaaaatt 2357077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 3200909 - 3201012
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||   ||| || |||||| |||||||| |||| ||||||    
T  3200909 agtgcctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaagatcttctctgccttagactggggcaccatctcctcgccctaa 3201008  T
Q  101 aatt 104  Q
    ||||    
T  3201009 aatt 3201012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 33066618 - 33066721
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||| |||||||| ||||||||||||| || |||||||||||||||||||||| |||||||||   | | ||||||||| |||||||||||||| |||||    
T  33066618 agtgtctttggagagaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttctctaccttggactggggcaccatcccctcatcctaa 33066717  T
Q  101 aatt 104  Q
    ||||    
T  33066718 aatt 33066721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 21487181 - 21487280
Alignment:
Q  6 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccat-cccctcaccctaaaatt 104  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||||||| ||||| | ||| || |||||| ||||||| ||||||| |||||||||    
T  21487181 ctttggagggaggtaaatgtaaatatttttgtaagtgctctttgagcccgaaagtcttccctgccttagactggggcaccatccccctcatcctaaaatt 21487280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 7860250 - 7860147
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||  ||| |||||||||| ||||||||||||||| | ||   ||| ||||||||  ||| ||||||||| ||||||    
T  7860250 agtgcctttggagggaggtaaatgtacatacatttgtaagtgttctttgagcccgaagattttctctgccttggactgaggcatcatcccctctccctaa 7860151  T
Q  101 aatt 104  Q
    ||||    
T  7860150 aatt 7860147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 2098875 - 2098827
Alignment:
Q  56 aaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    |||||||| | ||| ||||||||| ||||||||||||||||||||||||    
T  2098875 aaggtcttccctgccttggactggggcaccatcccctcaccctaaaatt 2098827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 4553657 - 4553561
Alignment:
Q  7 tttggagg-gaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    |||||||| ||||||||| ||| ||| ||||||||| ||||||||| ||| |||||||   ||  || |||||| ||||||||||||||| ||||||    
T  4553657 tttggaggagaggtaaatataaatacatttgtaagtactctttgagtccggaggtcttctctgtcttagactggggcaccatcccctcactctaaaa 4553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 30477280 - 30477240
Alignment:
Q  11 gagggaggtaaatgtaattacctttgtaagtgctctttgag 51  Q
    ||||||||||||| ||| ||||||||||||| |||||||||    
T  30477280 gagggaggtaaatctaaatacctttgtaagttctctttgag 30477240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 17095578 - 17095679
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  17095578 agtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 17095677  T
Q  101 aa 102  Q
    ||    
T  17095678 aa 17095679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 11404029 - 11404141
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  11404029 agtgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 11404128  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  11404129 aatttttgtaacc 11404141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 19723339 - 19723451
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||| ||||||||| ||||||||||||||||||||    
T  19723339 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccaaagatcttccctgccttggactggggcaccatcccctcaccctaa 19723438  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  19723439 aatttttgtaacc 19723451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32296743 - 32296640
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||| ||||||||||||||||||||    
T  32296743 agtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccatcccctcaccctaa 32296644  T
Q  101 aatt 104  Q
    ||||    
T  32296643 aatt 32296640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 22711539 - 22711640
Alignment:
Q  3 tgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||| |||||||    
T  22711539 tgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccttgccttggactggggcaccatcccctcatcctaaaa 22711638  T
Q  103 tt 104  Q
    ||    
T  22711639 tt 22711640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 36261679 - 36261777
Alignment:
Q  6 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||| ||||| |||||||||||||||| |||||||    
T  36261679 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcaccttaaaatt 36261777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 28739665 - 28739564
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| | | | |||||||| |||||||||||||||||||||    
T  28739665 agtgcctttggaggaaagtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgcagcaccatcccctcaccctaa 28739566  T
Q  101 aa 102  Q
    ||    
T  28739565 aa 28739564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 29767216 - 29767326
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  29767216 agtgcctttgaagggaggtaaat--aattacctttgtaagtgttctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 29767313  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  29767314 aatttttgtaacc 29767326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4840168 - 4840271
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||| || |||||||| | ||| ||||||| | ||||||||||||||||||||    
T  4840168 agtgcctttggagggaggtaaatgtcattaccattgtaagtgctctttgagtccaaaggtcttccctgccttggactagggcaccatcccctcaccctaa 4840267  T
Q  101 aatt 104  Q
    ||||    
T  4840268 aatt 4840271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 43288105 - 43288200
Alignment:
Q  6 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaa 101  Q
    |||||||||||||||||||||||||||||||||| || | |||||| ||||||||||| | ||| |||||||||||||||||||||||||||||||    
T  43288105 ctttggagggaggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgccttggactggagcaccatcccctcaccctaaa 43288200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 21355087 - 21355004
Alignment:
Q  2 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcacc 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||| |||||    
T  21355087 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 41553318 - 41553425
Alignment:
Q  6 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatta 105  Q
    ||||||||| | |||||||||| |||||||||||||| ||||||||| |||||||||| | ||| || |||||||||||||||||||||||||||||||     
T  41553318 ctttggaggaacgtaaatgtaaatacctttgtaagtgttctttgagctcgaaggtcttccctgccttagactggagcaccatcccctcaccctaaaattt 41553417  T
Q  106 atgtaacc 113  Q
     |||||||    
T  41553418 ttgtaacc 41553425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24475100 - 24475036
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttc 65  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  24475100 agtgcctttggagggaggtaaatgtaaatacctttgtaagtgttctttgagcccgaaggtctttc 24475036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 11909509 - 11909426
Alignment:
Q  19 taaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaa 102  Q
    ||||||||| ||||||| |||||||||||||||| |||||||||| | ||| ||||||||| ||||||||||||||||||||||    
T  11909509 taaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccctaaaa 11909426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 30682868 - 30682969
Alignment:
Q  2 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaa 101  Q
    |||||||||||| ||| ||||||||| ||| |||||||||| ||||||||||||||| |||| | ||| ||||||||| |||||||||||||||| ||||    
T  30682868 gtgcctttggagagagataaatgtaaatacttttgtaagtgttctttgagcccgaagatcttccctgccttggactgg-gcaccatcccctcaccttaaa 30682966  T
Q  102 att 104  Q
    |||    
T  30682967 att 30682969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 11610308 - 11610411
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||||  |||||||| ||| || ||||||||||||| ||| |||||||||||||| | |   ||||||||| ||||||||||||||||||||    
T  11610308 agtgcctttggagaaaggtaaatataaatatctttgtaagtgctgtttaagcccgaaggtcttacttatcttggactggggcaccatcccctcaccctaa 11610407  T
Q  101 aatt 104  Q
    ||||    
T  11610408 aatt 11610411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27881092 - 27881044
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttg 49  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||    
T  27881092 agtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 27881044  T

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Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28021273 - 28021225
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttg 49  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||    
T  28021273 agtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttg 28021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 27879620 - 27879561
Alignment:
Q  45 ctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    ||||||||| |||| |||| | | | ||||||||| ||||||||||||||||||||||||    
T  27879620 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaatt 27879561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 28019801 - 28019742
Alignment:
Q  45 ctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    ||||||||| |||| |||| | | | ||||||||| ||||||||||||||||||||||||    
T  28019801 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccctaaaatt 28019742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 51066521 - 51066622
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  51066521 agtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 51066620  T
Q  101 aa 102  Q
    ||    
T  51066621 aa 51066622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 46494502 - 46494401
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | | ||||||||| ||||||||||||||||||||    
T  46494502 agtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaa 46494403  T
Q  101 aa 102  Q
    ||    
T  46494402 aa 46494401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 7173689 - 7173586
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  7173689 agtgcctttggaaggaggtaaatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctgcgttggactggggcaccatcccctcaccctaa 7173590  T
Q  101 aatt 104  Q
    ||||    
T  7173589 aatt 7173586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 36192569 - 36192672
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | | | ||||||||| ||||||||||||||||||||    
T  36192569 agtgcctttggagggaggtaaatgtaattacttttgtaaatgctctttgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccctaa 36192668  T
Q  101 aatt 104  Q
    ||||    
T  36192669 aatt 36192672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 51714069 - 51713966
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||    
T  51714069 agtgcctttgaagggaggtaaatataaatacctttgtaagtgctctttgagcccgaaggtcttccctgctttgaactggggcaccatcccctcaccctaa 51713970  T
Q  101 aatt 104  Q
    ||||    
T  51713969 aatt 51713966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 29576444 - 29576546
Alignment:
Q  2 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaa 101  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||| ||||| ||| |||||| ||||||||||||||    
T  29576444 gtgcctttggagggaggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcaccctaaa 29576543  T
Q  102 att 104  Q
    |||    
T  29576544 att 29576546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 55231715 - 55231827
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||| ||||| | ||| ||||||||| ||||||||||||||||||||    
T  55231715 agtgcctttgaagggaggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcaccctaa 55231814  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  55231815 aatttttgtaacc 55231827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 30970488 - 30970385
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| | | | || |||||| ||||||||||||||||||||    
T  30970488 agtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctaccttagactggggcaccatcccctcaccctaa 30970389  T
Q  101 aatt 104  Q
    ||||    
T  30970388 aatt 30970385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 32139192 - 32139292
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||   ||| ||||||||| |||||||||| |||||||||    
T  32139192 agtgtctttggagggaggtaaatgtaattacctttgtaagtgttctttgagcctgaaggtcttctctgccttggactggggcaccatcccttcaccctaa 32139291  T
Q  101 a 101  Q
    |    
T  32139292 a 32139292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 50905776 - 50905879
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||| ||||| ||| ||||| |||||||||  |||||||||    
T  50905776 agtgcctttggagagaggtaaatgtaattatctttgtaggtgctctttgagtccgaaggtcttccatgccttgaactggggcaccatcctttcaccctaa 50905875  T
Q  101 aatt 104  Q
    ||||    
T  50905876 aatt 50905879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8740476 - 8740550
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttgga 75  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  8740476 agtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccatgccttgga 8740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 39863882 - 39863779
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||   | | ||||||||   ||| |||||||||||||||    
T  39863882 agtgcctttggagggaagtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttctctaccttggactgagacactatcccctcaccctaa 39863783  T
Q  101 aatt 104  Q
    ||||    
T  39863782 aatt 39863779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 676766 - 676859
Alignment:
Q  11 gagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||| |||||||| | ||||||||||| ||| |||||||    
T  676766 gagggaggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactgtaacaccatccccttaccttaaaatt 676859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 2570230 - 2570341
Alignment:
Q  2 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaa 101  Q
    |||||||||||||||||||||| ||| || | || ||| || |||||||| |||||| |||| | ||| ||||||||| |||||||||||||||||||||    
T  2570230 gtgcctttggagggaggtaaatataaatatcattataaatgttctttgagtccgaagatcttccctgccttggactggggcaccatcccctcaccctaaa 2570329  T
Q  102 attaatgtaacc 113  Q
    |||  |||||||    
T  2570330 atttttgtaacc 2570341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 22304167 - 22304092
Alignment:
Q  29 tacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    ||||||||||||||||||||||||||||||||||| | | | ||||||||| ||||||||| ||||||||||||||    
T  22304167 tacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcaccctaaaatt 22304092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47627097 - 47626994
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||| |||||||||||||||| ||||| | ||| | |||||||| | |||||||||| | ||| |||||||||| ||||||| |||||||||||    
T  47627097 agtgcctttgaagggaggtaaatgtaaatacctctataaatactctttgaactcgaaggtcttccctgccttggactggaacaccatctcctcaccctaa 47626998  T
Q  101 aatt 104  Q
    ||||    
T  47626997 aatt 47626994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 4080651 - 4080544
Alignment:
Q  6 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatta 105  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| | ||| |||||   ||  ||||| ||||||||||||||||| || |||||||     
T  4080651 ctttggagggaggtaaatgtaattacatttgtaaatgctctttgagtctgaatgtcttctctgtcttggattggagcaccatcccctcgccttaaaattt 4080552  T
Q  106 atgtaacc 113  Q
     |||||||    
T  4080551 ttgtaacc 4080544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41523425 - 41523487
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctt 63  Q
    |||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  41523425 agtgtctttggagggaggtaaatgtaaatacctttataagtgctctttgagctcgaaggtctt 41523487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 51279127 - 51279035
Alignment:
Q  11 gagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaat 103  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||| |||||||| |   | ||||| |   |||||||||||||||||||||||    
T  51279127 gagggaggtcaatgtaaatacttttgtaagtgctctttgagcccaaaggtcttcccaaccttggattaaggcaccatcccctcaccctaaaat 51279035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 22423408 - 22423479
Alignment:
Q  5 cctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggac 76  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||| |  |||||||||| | ||||||||||    
T  22423408 cctttggagggaggtaaatgtaaatacttttgtaagtgttctttgtgttcgaaggtcttccctgctttggac 22423479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2294814 - 2294719
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||||||||| ||||||||||||||||      ||||| || ||||||||||| |||||   ||| || |||||| ||||||||||||||||||||    
T  2294814 agtgcctttggaggaaggtaaatgtaattac------aagtgttcgttgagcccgaaagtcttcactgccttagactggggcaccatcccctcaccctaa 2294721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 50399739 - 50399694
Alignment:
Q  8 ttggagggaggtaaatgtaattacctttgtaagtgctctttgagcc 53  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||||    
T  50399739 ttggaggaaggtaaatgtaaatacctttgtaagtgttctttgagcc 50399694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 28202643 - 28202598
Alignment:
Q  52 cccgaaggtctttcatgctttggactggagcaccatcccctcaccc 97  Q
    |||||||||||||| ||  || ||||||||||||||||||||||||    
T  28202643 cccgaaggtctttcctgtcttagactggagcaccatcccctcaccc 28202598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 17064351 - 17064463
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | ||| ||||||||| ||||||||||||||||||||    
T  17064351 agtgcctttggagggaggtaaatgtaaatacctttgtaagtgctctttaagcccgaaggtcttccctgccttggactggggcaccatcccctcaccctaa 17064450  T
Q  101 aattaatgtaacc 113  Q
    ||||  |||||||    
T  17064451 aatttttgtaacc 17064463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 20983107 - 20983006
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||| ||||||||| ||||||||||||||||||||    
T  20983107 agtgccttcggagagaggtaaatgcaattacatttgtaagtgctctttgagcccgaaagtcttccctgccttggactggggcaccatcccctcaccctaa 20983008  T
Q  101 aa 102  Q
    ||    
T  20983007 aa 20983006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 37976598 - 37976681
Alignment:
Q  21 aatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||| ||| ||| ||||| ||||||||||||||||||||||||    
T  37976598 aatgtaaatacctttgtaagtgctatttgagcccgaaggtttttcctgccttgaactggggcaccatcccctcaccctaaaatt 37976681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 41910865 - 41910955
Alignment:
Q  14 ggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaaaatt 104  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| |||||   ||| ||| ||||| |||||||||||||||| |||||||    
T  41910865 ggaggtaaatgtaattaactttgtaagtgttctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcaccttaaaatt 41910955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 31673863 - 31673956
Alignment:
Q  6 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||||||| |||| |||||||| | |||||| |||||| |||||||||| |||||| | | ||| ||||||||| |||||| |||||||||||||    
T  31673863 ctttggagagaggaaaatgtaaatccctttg-aagtgccctttgagccctaaggtcctccctgccttggactggggcaccaacccctcaccctaa 31673956  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 5009520 - 5009418
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcaccctaa 100  Q
    |||| |||||||| ||| ||||||||| ||  ||||||| || |||||||  ||||||||||| ||||| ||| ||||| ||| ||||||| ||||||||    
T  5009520 agtgtctttggagagagataaatgtaaatatttttgtaaatgttctttgaatccgaaggtcttccatgccttgaactggtgcatcatcccc-caccctaa 5009422  T
Q  101 aatt 104  Q
    ||||    
T  5009421 aatt 5009418  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 18303409 - 18303350
Alignment:
Q  6 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttc 65  Q
    ||||||||| | ||||| |||| ||| |||||||||||||||| | ||||||||||||||    
T  18303409 ctttggaggaaagtaaacgtaaatacttttgtaagtgctctttaaacccgaaggtctttc 18303350  T

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Target: scaffold0021 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 107795 - 107700
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctttcatgctttggactggagcaccatcccctcacc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| ||||||||| ||||||||||||||||    
T  107795 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctaccctgccttggactggggcaccatcccctcacc 107700  T

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Target: scaffold0691 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7073 - 7011
Alignment:
Q  1 agtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctt 63  Q
    ||||| |||||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||    
T  7073 agtgcgtttggagggaagtaaatgtaattacctttgcaagtgttctttgagtccgaaggtctt 7011  T

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