View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10639_low_35 (Length: 238)

Name: NF10639_low_35
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10639_low_35
NF10639_low_35
[»] chr4 (9 HSPs)
chr4 (16-221)||(16402085-16402287)
chr4 (25-92)||(24343499-24343566)
chr4 (18-92)||(20743278-20743352)
chr4 (18-78)||(32910536-32910596)
chr4 (40-89)||(19230312-19230361)
chr4 (20-79)||(36635311-36635370)
chr4 (20-97)||(21945490-21945568)
chr4 (39-95)||(29088239-29088295)
chr4 (40-92)||(31243548-31243600)
[»] chr3 (9 HSPs)
chr3 (20-95)||(24205038-24205113)
chr3 (31-95)||(26665134-26665198)
chr3 (20-79)||(25948900-25948959)
chr3 (25-91)||(8903424-8903489)
chr3 (25-95)||(15864825-15864895)
chr3 (41-79)||(16192763-16192801)
chr3 (34-92)||(21211289-21211347)
chr3 (18-75)||(10954937-10954994)
chr3 (40-92)||(52369782-52369834)
[»] chr8 (9 HSPs)
chr8 (20-92)||(44067503-44067575)
chr8 (20-90)||(28883880-28883950)
chr8 (41-128)||(34897093-34897181)
chr8 (41-95)||(3025559-3025614)
chr8 (20-79)||(4786351-4786410)
chr8 (41-79)||(4611542-4611580)
chr8 (30-79)||(7658460-7658509)
chr8 (31-96)||(35431136-35431201)
chr8 (31-92)||(40063949-40064010)
[»] chr7 (10 HSPs)
chr7 (20-92)||(43249980-43250052)
chr7 (20-127)||(27945028-27945137)
chr7 (20-79)||(15902809-15902868)
chr7 (20-79)||(5835234-5835293)
chr7 (40-95)||(12278842-12278897)
chr7 (20-79)||(22868029-22868088)
chr7 (41-128)||(3721101-3721189)
chr7 (40-92)||(5938479-5938531)
chr7 (32-92)||(23930218-23930278)
chr7 (20-76)||(32308107-32308163)
[»] chr5 (10 HSPs)
chr5 (18-95)||(7997163-7997240)
chr5 (20-90)||(18586291-18586360)
chr5 (19-95)||(28588670-28588747)
chr5 (40-92)||(5467978-5468030)
chr5 (20-79)||(3966490-3966549)
chr5 (41-127)||(8420035-8420122)
chr5 (20-79)||(12264842-12264901)
chr5 (31-90)||(18607099-18607158)
chr5 (20-77)||(21191071-21191128)
chr5 (32-92)||(43554520-43554580)
[»] chr1 (10 HSPs)
chr1 (20-95)||(22794075-22794150)
chr1 (40-86)||(24176373-24176419)
chr1 (20-86)||(36878448-36878514)
chr1 (16-77)||(10572604-10572665)
chr1 (31-92)||(39101182-39101243)
chr1 (20-79)||(15641043-15641102)
chr1 (31-85)||(40747780-40747834)
chr1 (20-85)||(398772-398837)
chr1 (22-79)||(34298425-34298482)
chr1 (20-96)||(3490386-3490462)
[»] scaffold0007 (1 HSPs)
scaffold0007 (20-89)||(225271-225340)
[»] chr6 (19 HSPs)
chr6 (20-127)||(5732474-5732582)
chr6 (33-92)||(34446565-34446624)
chr6 (21-79)||(32313392-32313450)
chr6 (20-92)||(6389730-6389802)
chr6 (20-130)||(426475-426586)
chr6 (82-129)||(2117130-2117177)
chr6 (20-79)||(7996391-7996450)
chr6 (20-79)||(8022351-8022410)
chr6 (20-79)||(19044451-19044510)
chr6 (19-78)||(34290091-34290150)
chr6 (22-95)||(19040341-19040415)
chr6 (32-93)||(12086344-12086405)
chr6 (18-79)||(15443680-15443741)
chr6 (19-75)||(4859130-4859186)
chr6 (20-95)||(7265589-7265665)
chr6 (40-80)||(7569180-7569220)
chr6 (20-127)||(13851723-13851831)
chr6 (20-92)||(17168463-17168535)
chr6 (24-127)||(20371074-20371178)
[»] chr2 (15 HSPs)
chr2 (25-92)||(19573970-19574037)
chr2 (20-65)||(12464876-12464921)
chr2 (31-92)||(25544479-25544540)
chr2 (19-78)||(21782832-21782891)
chr2 (41-80)||(25846749-25846788)
chr2 (40-127)||(12748691-12748786)
chr2 (24-128)||(19536360-19536466)
chr2 (20-127)||(31018577-31018689)
chr2 (41-126)||(34691770-34691856)
chr2 (41-126)||(34714182-34714268)
chr2 (20-77)||(30404865-30404922)
chr2 (91-127)||(22084756-22084792)
chr2 (20-92)||(23354652-23354724)
chr2 (32-92)||(30563408-30563468)
chr2 (23-79)||(37411257-37411313)
[»] scaffold0306 (1 HSPs)
scaffold0306 (20-77)||(13387-13444)
[»] scaffold0152 (1 HSPs)
scaffold0152 (20-77)||(21883-21940)
[»] scaffold0004 (1 HSPs)
scaffold0004 (20-77)||(92794-92851)
[»] scaffold0050 (1 HSPs)
scaffold0050 (20-95)||(70265-70341)
[»] scaffold0027 (1 HSPs)
scaffold0027 (24-127)||(46673-46776)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 16402287 - 16402085
Alignment:
Q  16 atgaacactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggacatgcctaattcgatgagtgtc 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||     ||   |||||    
T  16402287 atgaacactgacatgccgacacggataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggaca---ct-----gacacgtgtc 16402196  T
Q  116 tgtgcttcataggatgttgaataagctctatttatcaaacaagagaaaacaaact-----nnnnnnnnntgccattatcaaactacagaaactgaaagtg 210  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||    
T  16402195 cttgcttcataggatgttgaataagctctatttatcaaacaagagaaaacaaactaaaaaaaaaaataatgccattatcaaactacagaaactgaaagtg 16402096  T
Q  211 agtaccacttt 221  Q
    |||||||||||    
T  16402095 agtaccacttt 16402085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 24343499 - 24343566
Alignment:
Q  25 gacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    |||| ||||||||| |||||||||||||||||| |||| || |||||||||||||| |||||||||||    
T  24343499 gacacgccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcgg 24343566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 20743352 - 20743278
Alignment:
Q  18 gaacactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    ||||||||||| ||||||||| |||||||||||||||||| |||| || ||||||||| |||| ||| |||||||    
T  20743352 gaacactgacacgccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcgg 20743278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 32910536 - 32910596
Alignment:
Q  18 gaacactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattat 78  Q
    |||||| ||||| |||||||| |||||||||||||||||| |||| || ||||||||||||    
T  32910536 gaacaccgacataccgacacggataataatttgagaaaatgacataattcagtgtaattat 32910596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 19230361 - 19230312
Alignment:
Q  40 ataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgt 89  Q
    ||||||||||||||||||||||| || || ||||||||||| ||||||||    
T  19230361 ataataatttgagaaaataacataattcaatgtaattataggtgtcgtgt 19230312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 36635311 - 36635370
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||||| ||| |||| | ||||||||||||||||| |||| || |||||||||||||    
T  36635311 acactgacacgccaacaccactaataatttgagaaaatcacataattcagtgtaattata 36635370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 21945490 - 21945568
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggacatg 97  Q
    ||||||||||||||||||   ||||||||||| ||||| |||| || ||||||||||| |  |||| ||||||||||||    
T  21945490 acactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacatg 21945568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 29088295 - 29088239
Alignment:
Q  39 aataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggaca 95  Q
    ||||||||||||||||||| | |  |||||||||||||||||  ||||||| |||||    
T  29088295 aataataatttgagaaaatgataaaatacagtgtaattataggcgtcgtgttggaca 29088239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 31243600 - 31243548
Alignment:
Q  40 ataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    |||||||||||||||||| |||| || ||||||||| |||| |||| ||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcgg 31243548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 24205113 - 24205038
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggaca 95  Q
    ||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||  ||||||||||||||    
T  24205113 acactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggaca 24205038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 26665134 - 26665198
Alignment:
Q  31 ccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggaca 95  Q
    ||||||| ||||||||||||||||||| || |||| || |||||||||||  |||||||||||||    
T  26665134 ccgacacaaataataatttgagaaaatgacgtgattcactgtaattataggcgtcgtgtcggaca 26665198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 25948959 - 25948900
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||||||||||| |||  ||||||||||| ||||| |||| || |||||||||||||    
T  25948959 acactgacatgccgatacggctaataatttgaaaaaatcacataattcagtgtaattata 25948900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 8903424 - 8903489
Alignment:
Q  25 gacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcg 91  Q
    |||| ||||||||| |||||| ||||||||||| |||| ||  ||||||||||||| ||||||||||    
T  8903424 gacacgccgacacggataatattttgagaaaatgacat-atttagtgtaattataggtgtcgtgtcg 8903489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 15864825 - 15864895
Alignment:
Q  25 gacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggaca 95  Q
    |||| ||||||||| |||||||||||| ||||| | || ||  |||||||| |||| ||||||||||||||    
T  15864825 gacacgccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcggaca 15864895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 16192801 - 16192763
Alignment:
Q  41 taataatttgagaaaataacatgatacagtgtaattata 79  Q
    |||||||||||||||||||||| || |||||||||||||    
T  16192801 taataatttgagaaaataacataattcagtgtaattata 16192763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 21211289 - 21211347
Alignment:
Q  34 acacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    ||||| |||||||||||||||||| ||||  | |||||||||||| | |||||||||||    
T  21211289 acacggataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcgg 21211347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 10954937 - 10954994
Alignment:
Q  18 gaacactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaat 75  Q
    ||||||||||| |||||||| | ||||||||||| ||||| |||| || |||||||||    
T  10954937 gaacactgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaat 10954994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 52369782 - 52369834
Alignment:
Q  40 ataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    |||||||||||||||||| |||| || || |||||| |||| |||||||||||    
T  52369782 ataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcgg 52369834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 44067503 - 44067575
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    ||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||  |||||||||||    
T  44067503 acactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcgg 44067575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 28883950 - 28883880
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtc 90  Q
    |||||||||||||| ||||||||||||||||||||||| |||| || ||||| ||| |||| |||| ||||    
T  28883950 acactgacatgccgccacgaataataatttgagaaaatgacataattcagtggaatcataggtgtcttgtc 28883880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 34897093 - 34897181
Alignment:
Q  41 taataatttgagaaaataacatgatacagtgtaattatagctgtcg-tgtcggacatgcctaattcgatgagtgtctgtgcttcatagg 128  Q
    ||||||||||||||||| |||| || |||||||||||||  ||||| |||||||||    |||||||| ||||||| ||||||||||||    
T  34897093 taataatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcggacacatgtaattcgaggagtgtccgtgcttcatagg 34897181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 3025559 - 3025614
Alignment:
Q  41 taataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggaca 95  Q
    ||||||||||||||||| |||| || |||||||||||||| |||| ||||||||||    
T  3025559 taataatttgagaaaatcacataattcagtgtaattataggtgtcagtgtcggaca 3025614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 4786410 - 4786351
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||||| |||||||| | ||||||||| ||||||| |||| || |||||||||||||    
T  4786410 acactgacacgccgacaccattaataatttaagaaaatcacataattcagtgtaattata 4786351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 4611542 - 4611580
Alignment:
Q  41 taataatttgagaaaataacatgatacagtgtaattata 79  Q
    |||||||||||||||||||||| || |||||||||||||    
T  4611542 taataatttgagaaaataacataattcagtgtaattata 4611580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 7658460 - 7658509
Alignment:
Q  30 gccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    |||||||| | ||||||||||||||||| |||| || |||||||||||||    
T  7658460 gccgacaccactaataatttgagaaaattacataattcagtgtaattata 7658509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 35431201 - 35431136
Alignment:
Q  31 ccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggacat 96  Q
    |||| ||| |||||||||||||||||| ||||  |  |||||||| |||| |||||||||||||||    
T  35431201 ccgaaacggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcggacat 35431136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 40063949 - 40064010
Alignment:
Q  31 ccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    ||||||| ||||||||||||||||||| |||| || || |||||| ||||  ||||||||||    
T  40063949 ccgacaccaataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcgg 40064010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 43249980 - 43250052
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    ||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||  |||||||||||    
T  43249980 acactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcgg 43250052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 27945028 - 27945137
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcg-gacatgcctaattcgatgagtgtctg 117  Q
    ||||||||| |||||||| | ||||||||||||||||| |||| || ||||||||||| |  |||| |||||| | || |||||| |||| ||||||| |    
T  27945028 acactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtcacgcctaactcgaggagtgtccg 27945127  T
Q  118 tgcttcatag 127  Q
    ||||||||||    
T  27945128 tgcttcatag 27945137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 15902809 - 15902868
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    |||||||||||||||||| ||||||||||||| ||||| |||| ||  ||||||||||||    
T  15902809 acactgacatgccgacaccaataataatttgataaaatcacataatttagtgtaattata 15902868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 5835234 - 5835293
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||| | |||||||| | ||||| |||||||||||||||| || |||||||||||||    
T  5835234 acactgatacgccgacaccactaatagtttgagaaaataacataattcagtgtaattata 5835293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 12278842 - 12278897
Alignment:
Q  40 ataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggaca 95  Q
    |||||||||| ||||||| |||| || |||||||||||||  ||||||||||||||    
T  12278842 ataataatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtcggaca 12278897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 22868029 - 22868088
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||||| |||||||| | ||||||| ||||||||| |||| || |||||||||||||    
T  22868029 acactgacacgccgacaccactaataatatgagaaaatcacataattcagtgtaattata 22868088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 3721101 - 3721189
Alignment:
Q  41 taataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggacatgcctaattcgatgagtgtctgtgcttcatagg 128  Q
    ||||||||||||||||| |||| ||  ||| ||||||||  |||| |||||||||| ||||||| ||| |||  | |||||||||||||    
T  3721101 taataatttgagaaaatcacataatttagtataattatatgtgtcggtgtcggacacgcctaatccgaggagcatatgtgcttcatagg 3721189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 5938479 - 5938531
Alignment:
Q  40 ataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    |||||||||||| |||||||||| || |||| ||||||||| ||| |||||||    
T  5938479 ataataatttgataaaataacataattcagtataattataggtgttgtgtcgg 5938531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 23930218 - 23930278
Alignment:
Q  32 cgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    ||||||| ||| |||||||||||||| |||| || ||||||||| |||| ||| |||||||    
T  23930218 cgacacggatagtaatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcgg 23930278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 32308107 - 32308163
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaatt 76  Q
    ||||||||| ||||||||   ||||||||||||||||| |||| || ||||||||||    
T  32308107 acactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaatt 32308163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 7997240 - 7997163
Alignment:
Q  18 gaacactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggaca 95  Q
    ||||||||||| ||| ||||| |||||||||||||||||| | || ||||||||||||||||  ||||||||||||||    
T  7997240 gaacactgacacgccaacacggataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtcggaca 7997163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 18586360 - 18586291
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtc 90  Q
    ||||||||||| ||| ||| |||||||||||| ||||| |||| ||||||||||||||||| |||||||||    
T  18586360 acactgacatgtcgatacggataataatttga-aaaatgacataatacagtgtaattataggtgtcgtgtc 18586291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 28588747 - 28588670
Alignment:
Q  19 aacactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggaca 95  Q
    |||| ||||| ||||||||   ||||||||||||||||| |||| || |||||||||||||| |||| ||||||||||    
T  28588747 aacattgacacgccgacaccggtaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggaca 28588670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 5468030 - 5467978
Alignment:
Q  40 ataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    |||||||||||| ||||| |||| || |||||||||||||| |||||||||||    
T  5468030 ataataatttgataaaatcacataattcagtgtaattataggtgtcgtgtcgg 5467978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 3966490 - 3966549
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||||||||||||||   ||||||||||||||||| |||  || |||||||||||||    
T  3966490 acactgacatgccgacaccgctaataatttgagaaaatcacacaattcagtgtaattata 3966549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 8420035 - 8420122
Alignment:
Q  41 taataatttgagaaaataacatgatacagtgtaattatagctgtcg-tgtcggacatgcctaattcgatgagtgtctgtgcttcatag 127  Q
    ||||||||||| |||||||||| || || |||||||| |  ||||| ||||||||  ||||||||||| |||| || |||||||||||    
T  8420035 taataatttgaaaaaataacataattcaatgtaattacaagtgtcggtgtcggacgcgcctaattcgaggagtatccgtgcttcatag 8420122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 12264901 - 12264842
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||||||||| ||||   |||| |||||||||||| ||||||| |||||||||||||    
T  12264901 acactgacatgccaacaccgctaattatttgagaaaattacatgattcagtgtaattata 12264842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 18607158 - 18607099
Alignment:
Q  31 ccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtc 90  Q
    |||||| | ||||||||||||||||||||||| || || |||||| |||| |||||||||    
T  18607158 ccgacatggataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtc 18607099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 21191128 - 21191071
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaatta 77  Q
    ||||||||||||||||||   ||||||||||| ||||| |||| || |||||||||||    
T  21191128 acactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 21191071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 43554520 - 43554580
Alignment:
Q  32 cgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    ||||||| |||||||||||||||||| | || ||  |||||||| |||| |||||||||||    
T  43554520 cgacacgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 43554580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 22794150 - 22794075
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggaca 95  Q
    ||||||||| | | ||||| |||||||||||| ||||| |||| ||||||||||||||||| ||||||||| ||||    
T  22794150 acactgacacgtcaacacggataataatttgaaaaaatgacataatacagtgtaattataggtgtcgtgtccgaca 22794075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 24176419 - 24176373
Alignment:
Q  40 ataataatttgagaaaataacatgatacagtgtaattatagctgtcg 86  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||    
T  24176419 ataataatttgagaaaataacatcattcagtgtaattataggtgtcg 24176373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 36878448 - 36878514
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcg 86  Q
    ||||||||| ||||||||   ||||||||||||||||| |||| || |||||||||||||| |||||    
T  36878448 acactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcg 36878514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 10572665 - 10572604
Alignment:
Q  16 atgaacactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaatta 77  Q
    ||||||||||||| |||||||| | ||||||||||||||||| |||| || | |||||||||    
T  10572665 atgaacactgacacgccgacaccactaataatttgagaaaatcacataattcggtgtaatta 10572604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 39101243 - 39101182
Alignment:
Q  31 ccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    |||||||  ||||||||||||||||||||||| ||  ||||||||||||| |||||| ||||    
T  39101243 ccgacacatataataatttgagaaaataacataattaagtgtaattataggtgtcgtttcgg 39101182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 15641102 - 15641043
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||||||||||||||   ||||||||| ||||||| ||||||| |||||||| ||||    
T  15641102 acactgacatgccgacactgctaataatttaagaaaatcacatgattcagtgtaactata 15641043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 40747834 - 40747780
Alignment:
Q  31 ccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc 85  Q
    |||||||| |||||||||||||||||| |||| || || ||||||||||| ||||    
T  40747834 ccgacacggataataatttgagaaaatgacataattcaatgtaattataggtgtc 40747780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 398837 - 398772
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc 85  Q
    ||||||||| ||||||||   ||||||||||| ||||| |||| || |||||||||||||| ||||    
T  398837 acactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattataggtgtc 398772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 34298425 - 34298482
Alignment:
Q  22 actgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    |||||||  ||||||| | ||||||||||||||||| |||| || |||||||||||||    
T  34298425 actgacacaccgacaccactaataatttgagaaaatcacataattcagtgtaattata 34298482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 3490462 - 3490386
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggacat 96  Q
    ||||||||| ||||||||   ||||||||||||||||  |||| || ||||||||||| |  ||||||||| |||||    
T  3490462 acactgacacgccgacactgctaataatttgagaaaactacattattcagtgtaattacaagtgtcgtgtccgacat 3490386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 225340 - 225271
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgt 89  Q
    ||||||||| ||||||||  |||||||||||||||||| |||| ||||| ||||||||||  ||||||||    
T  225340 acactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaattataagtgtcgtgt 225271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 5732582 - 5732474
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggacatgcctaattcgatgagtgtctgt 118  Q
    ||||||||| ||||||||   ||||||||||||||||| ||||  |  ||||||||||||  |||| |||||||||| ||||||| ||| |||||||  |    
T  5732582 acactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaattatatgtgtcggtgtcggacacgcctaatccgaggagtgtccat 5732483  T
Q  119 gcttcatag 127  Q
    |||||||||    
T  5732482 gcttcatag 5732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 34446565 - 34446624
Alignment:
Q  33 gacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    |||||| |||||||||||||||||| |||| || ||||||||| |||| |||||||||||    
T  34446565 gacacggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcgg 34446624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 32313392 - 32313450
Alignment:
Q  21 cactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    |||||||| |||||||| |||||||| |||||||||||||||||| || || |||||||    
T  32313392 cactgacacgccgacaccaataataagttgagaaaataacatgattcaatgcaattata 32313450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 6389730 - 6389802
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    ||||| ||| ||||||||| |||||||||||||||||| | || ||  |||||||| |||| |||||||||||    
T  6389730 acactcacacgccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 6389802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 426586 - 426475
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcg-tgtcggacatgcctaattcgatgagtgtctgt 118  Q
    ||||||||| ||||||||   ||||||||||| ||||| |||| ||  | |||||||| |  ||||| ||||||||| |||||||  || ||||||| ||    
T  426586 acactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattacaagtgtcggtgtcggacacgcctaatctgaggagtgtccgt 426487  T
Q  119 gcttcataggat 130  Q
    ||||||||||||    
T  426486 gcttcataggat 426475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 2117130 - 2117177
Alignment:
Q  82 tgtcgtgtcggacatgcctaattcgatgagtgtctgtgcttcatagga 129  Q
    ||||||||||||||||||||||  || ||||||| |||||||||||||    
T  2117130 tgtcgtgtcggacatgcctaatcggaggagtgtccgtgcttcatagga 2117177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 7996450 - 7996391
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||||||||||||||   ||||||||||||||||| | || || |||||||||||||    
T  7996450 acactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattata 7996391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 8022351 - 8022410
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||||||||||||||   ||||||||||||||||| | || || |||||||||||||    
T  8022351 acactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattata 8022410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 19044451 - 19044510
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||||| |||||||||| |||||||||||||| || |||| || |||||| ||||||    
T  19044451 acactgacacgccgacacgactaataatttgagaatatcacataattcagtgttattata 19044510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 34290150 - 34290091
Alignment:
Q  19 aacactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattat 78  Q
    ||||||||||||||||||| | |||||||||| || ||| |||| || ||||||||||||    
T  34290150 aacactgacatgccgacacaactaataatttgcgagaatcacataattcagtgtaattat 34290091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 19040341 - 19040415
Alignment:
Q  22 actgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggaca 95  Q
    ||||||| ||||||||   ||||||||||||||||| |||| || |||||||||||||  |||| ||||||||||    
T  19040341 actgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgtcggaca 19040415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 12086405 - 12086344
Alignment:
Q  32 cgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgga 93  Q
    ||||||| |||||||||||||| ||| |||| || |||| |||| |||| ||||||||||||    
T  12086405 cgacacggataataatttgagataatgacataattcagtttaatcataggtgtcgtgtcgga 12086344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 15443680 - 15443741
Alignment:
Q  18 gaacactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    ||||||||||| | |||||  |||||||||||||||||||||||| || || | ||||||||    
T  15443680 gaacactgacacgtcgacatcaataataatttgagaaaataacataattcaatataattata 15443741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 4859186 - 4859130
Alignment:
Q  19 aacactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaat 75  Q
    |||||| ||||| |||||| ||||||||||||||||||| |||| || || ||||||    
T  4859186 aacactaacatgtcgacaccaataataatttgagaaaatgacataatccaatgtaat 4859130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 7265665 - 7265589
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggaca 95  Q
    ||||||||| ||| ||||   ||||||||||||||||| |||| || |||||||||||||  |||| ||||||||||    
T  7265665 acactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcggaca 7265589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 7569220 - 7569180
Alignment:
Q  40 ataataatttgagaaaataacatgatacagtgtaattatag 80  Q
    |||||||||||||||||| |||| || ||||||||||||||    
T  7569220 ataataatttgagaaaattacataattcagtgtaattatag 7569180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 13851723 - 13851831
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcg-tgtcggacatgcctaattcgatgagtgtctgt 118  Q
    ||||||||| | ||||||   |||||||||||||||||||| | || |||||||||||||  ||||| |||| |||| ||||||   || || ||||| |    
T  13851723 acactgacacgtcgacaccgctaataatttgagaaaataacgtaattcagtgtaattatatgtgtcgatgtctgacacgcctaacctgaggaatgtctat 13851822  T
Q  119 gcttcatag 127  Q
    |||||||||    
T  13851823 gcttcatag 13851831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 17168535 - 17168463
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    ||||||||| ||| ||||  |||||||||||||||||| | || ||  |||||||| |||| |||||||||||    
T  17168535 acactgacacgccaacactgataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcgg 17168463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 20371178 - 20371074
Alignment:
Q  24 tgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggacatgcctaattcgatgagtgtctgtgctt 122  Q
    ||||| ||||||||   ||||||||||||||||| |||| |  || ||| ||||||  |||| |||||| ||| ||||||| ||| |||||||||| |||    
T  20371178 tgacacgccgacaccgctaataatttgagaaaatcacataactcaatgtgattatatgtgtcggtgtcgaacaagcctaatccgaggagtgtctgttctt 20371079  T
Q  123 catag 127  Q
    |||||    
T  20371078 catag 20371074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 19573970 - 19574037
Alignment:
Q  25 gacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    |||| ||||||||  |||||||||| |||||||||||| || |||||||||||||| || ||||||||    
T  19573970 gacacgccgacaccgataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcgg 19574037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 12464921 - 12464876
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgat 65  Q
    ||||||||| |||||||| ||||||||||||||||||| |||||||    
T  12464921 acactgacacgccgacaccaataataatttgagaaaatgacatgat 12464876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 25544479 - 25544540
Alignment:
Q  31 ccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    |||||||| |||||||||||||||||| | || || ||||||||| |||| |||||||||||    
T  25544479 ccgacacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcgg 25544540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 21782891 - 21782832
Alignment:
Q  19 aacactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattat 78  Q
    |||||||||| ||||||||   ||||||||||||||||| |||| || ||||||||||||    
T  21782891 aacactgacacgccgacactgctaataatttgagaaaatcacataattcagtgtaattat 21782832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 25846749 - 25846788
Alignment:
Q  41 taataatttgagaaaataacatgatacagtgtaattatag 80  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  25846749 taataatttgagaaaatcacatgattcagtgtaattatag 25846788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 12748691 - 12748786
Alignment:
Q  40 ataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcggac--------atgcctaattcgatgagtgtctgtgcttcatag 127  Q
    |||||||||||||||||| ||||  | ||||||||| |||| ||| |||||||||        |||||||||| || |||||||||||||||||||    
T  12748691 ataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgtcggacaccgggacatgcctaatttgaggagtgtctgtgcttcatag 12748786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 19536466 - 19536360
Alignment:
Q  24 tgacatgccgacacgaataataatttgagaaaa-taacatgatacagtgtaattatagctgtcg-tgtcggacatgcctaattcgatgagtgtctgtgct 121  Q
    ||||| |||||||| | ||||||||||| |||| | |||| || ||||||||||| |  ||||| ||||||||| ||||||| ||| |||||||  ||||    
T  19536466 tgacacgccgacacaactaataatttgaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgcctaatccgaggagtgtccatgct 19536367  T
Q  122 tcatagg 128  Q
    |||||||    
T  19536366 tcatagg 19536360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 31018577 - 31018689
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggaca--tgc--ctaattcgatgagtgt 114  Q
    ||||||||| ||| ||||   ||||||||| ||||||| |||||||  ||||||||||||| |||| ||||||||||  |||  ||||| ||| ||||||    
T  31018577 acactgacacgccaacaccgctaataatttcagaaaatcacatgatttagtgtaattataggtgtcggtgtcggacacgtgcgtctaatccgaggagtgt 31018676  T
Q  115 ctgtgcttcatag 127  Q
    | |||||||||||    
T  31018677 cagtgcttcatag 31018689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 34691856 - 34691770
Alignment:
Q  41 taataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggacatgcctaattcgatgagtgtctgtgcttcata 126  Q
    ||||||||||| ||||| | || || |||||||||||||  |||| |||||||||| ||||||| ||| ||||||| ||| ||||||    
T  34691856 taataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34691770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 34714268 - 34714182
Alignment:
Q  41 taataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggacatgcctaattcgatgagtgtctgtgcttcata 126  Q
    ||||||||||| ||||| | || || |||||||||||||  |||| |||||||||| ||||||| ||| ||||||| ||| ||||||    
T  34714268 taataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcggacacgcctaatccgaggagtgtccgtgtttcata 34714182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 30404922 - 30404865
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaatta 77  Q
    ||||||||| |||||||||  ||||||||||| ||||| |||| || |||||||||||    
T  30404922 acactgacacgccgacacggttaataatttgaaaaaatcacataattcagtgtaatta 30404865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 22084792 - 22084756
Alignment:
Q  91 ggacatgcctaattcgatgagtgtctgtgcttcatag 127  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  22084792 ggacacgcctaatccgatgagtgtctgtgcttcatag 22084756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 23354724 - 23354652
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    |||| ||||||| |||||  |||||||||||||||||| | || ||  |||||||| |||| |||||||||||    
T  23354724 acaccgacatgctgacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 23354652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 30563408 - 30563468
Alignment:
Q  32 cgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtcgtgtcgg 92  Q
    ||||||| |||||||||||||||||| |||| || || ||||| ||||| ||| |||||||    
T  30563408 cgacacggataataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcgg 30563468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 37411313 - 37411257
Alignment:
Q  23 ctgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattata 79  Q
    |||||||||||||||   ||||||||||||||||| |||| || |||||| ||||||    
T  37411313 ctgacatgccgacaccgctaataatttgagaaaatcacataattcagtgtgattata 37411257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 13387 - 13444
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaatta 77  Q
    ||||||||| |||||||| | ||||||||||||||||| |||| || ||||| |||||    
T  13387 acactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaatta 13444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 21940 - 21883
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaatta 77  Q
    ||||||||| |||||||| | ||||||||||||||||| |||| || ||||| |||||    
T  21940 acactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaatta 21883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 92794 - 92851
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaatta 77  Q
    ||||||||| ||||||||   ||||||||||||||||| |||| || |||||||||||    
T  92794 acactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaatta 92851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 70265 - 70341
Alignment:
Q  20 acactgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggaca 95  Q
    |||| |||||| ||||||   ||||||||||| |||||||||| || |||||||||||||  |||| ||||||||||    
T  70265 acacagacatgtcgacacagttaataatttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggaca 70341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 46673 - 46776
Alignment:
Q  24 tgacatgccgacacgaataataatttgagaaaataacatgatacagtgtaattatagctgtc-gtgtcggacatgcctaattcgatgagtgtctgtgctt 122  Q
    ||||| ||||||||   ||||||||||| ||||| |||| || ||||||||||| |  |||| ||||| |||| ||||||| ||| ||||||| ||||||    
T  46673 tgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaattacaaatgtcggtgtc-gacacgcctaatccgaggagtgtccgtgctt 46771  T
Q  123 catag 127  Q
    |||||    
T  46772 catag 46776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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