View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_36 (Length: 236)
Name: NF10639_low_36
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6134176 - 6133955
Alignment:
| Q |
1 |
catggtggaagattcaatccagctttatcacaaagatccattaaaagtggcaatgcaagcctatcattcactatcttccacaattcaaaaacctcatttt |
100 |
Q |
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| T |
6134176 |
catggtggaagattcaatccagctttatcacaaagatccattaaaagtggcaatgcaagcctatcattcactatcttccacaattcaaaaacctcatttt |
6134077 |
T |
|
| Q |
101 |
catcatcattaacattaaaactagcaatagattcaaaatttgatagcataaactttaaaggcttggaaaatctatatttatctaaataaaccctatgtac |
200 |
Q |
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| T |
6134076 |
catcatcattaacattaaaactagcaatagattcaaaatttgatagcataaactttaaaggcttggaaaatctatatttatctaaataaaccctatgtac |
6133977 |
T |
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| Q |
201 |
acttgacccaacatcatcatac |
222 |
Q |
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| T |
6133976 |
atttgacccaacatcatcatac |
6133955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 20600356 - 20600135
Alignment:
| Q |
4 |
ggtggaagattcaatccagctttatcacaaagatccattaaaagtggcaatgcaagcctatcattcactatcttccacaattcaaaaacctcattttcat |
103 |
Q |
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| T |
20600356 |
ggtggaagaatcaatccagctttatcacaaagatcaattaaaagtggaaatgcaagcctatcgttcactatcttccacaattccaaaacttcatctttat |
20600257 |
T |
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| Q |
104 |
catcattaacattaaaactagcaatagattcaaaatttga---tagcataaactttaaaggcttggaaaatctatatttatctaaataaaccctatgtac |
200 |
Q |
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| T |
20600256 |
caccatcaacattaacacaagcattagattcagaatttgacatcagcagaaactctaaaggcttggcaaatctacatttatctaaataaaccatatgtac |
20600157 |
T |
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| Q |
201 |
acttgacccaacatcatcatac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
20600156 |
acttgacccaacatcatcatac |
20600135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 47944543 - 47944740
Alignment:
| Q |
16 |
aatccagctttatcacaaagatccattaaaagtggcaatgcaagcctatcattcactatcttccacaattcaaaaacctcattttcatcatcattaacat |
115 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||| | || | || ||| | | |
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| T |
47944543 |
aatccagctttatcacaaagatcaattaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaactttatctccaacat------cgt |
47944636 |
T |
|
| Q |
116 |
taaaactagcaatagattcaaaatttgatagcataaactttaaaggcttggaaaatctatatttatctaaataaaccctatgtacacttgacccaacatc |
215 |
Q |
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| T |
47944637 |
taaaattaccattaaattcagaattttccagcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatc |
47944736 |
T |
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