View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10639_low_37 (Length: 230)

Name: NF10639_low_37
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10639_low_37
NF10639_low_37
[»] chr3 (3 HSPs)
chr3 (1-163)||(7301182-7301344)
chr3 (73-162)||(31106093-31106182)
chr3 (84-155)||(20880404-20880474)
[»] chr8 (2 HSPs)
chr8 (81-155)||(1058146-1058220)
chr8 (114-155)||(10758328-10758369)
[»] chr1 (2 HSPs)
chr1 (85-155)||(27976523-27976593)
chr1 (85-155)||(37473327-37473397)
[»] chr7 (5 HSPs)
chr7 (98-163)||(40252171-40252236)
chr7 (81-154)||(46078071-46078144)
chr7 (111-162)||(20269530-20269581)
chr7 (114-156)||(8960698-8960740)
chr7 (125-162)||(28613599-28613636)
[»] chr5 (2 HSPs)
chr5 (98-153)||(35445996-35446051)
chr5 (125-153)||(37112332-37112360)
[»] chr6 (2 HSPs)
chr6 (84-154)||(24626222-24626292)
chr6 (84-154)||(30536405-30536475)
[»] chr4 (4 HSPs)
chr4 (87-155)||(19494844-19494912)
chr4 (85-155)||(54069489-54069559)
chr4 (83-155)||(17204064-17204136)
chr4 (125-161)||(41336728-41336764)
[»] chr2 (5 HSPs)
chr2 (82-154)||(42868534-42868606)
chr2 (84-156)||(45229439-45229511)
chr2 (81-155)||(42659223-42659297)
chr2 (86-155)||(41812162-41812231)
chr2 (85-153)||(13325498-13325566)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 7301182 - 7301344
Alignment:
Q  1 agatgagaagaaaataaataaaaaacgtgaggaaagtagaattgtttttgtaggttatattacaatcatttttcacgtttagcgcttatgtatgagttta 100  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7301182 agatgagaagaaaataaataaaaaacgtgaagaaaatagaattgtttttgtaggttatattacaatcatttttcacgtttagcgcttatgtatgagttta 7301281  T
Q  101 catatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatgtcataagc 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7301282 catatgctaattttatagctaataataaaacaaagttaaattgtttttttatatgtcataagc 7301344  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 31106093 - 31106182
Alignment:
Q  73 tcacgtttagcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatgtcataag 162  Q
    |||| ||||| ||||||||||||| ||||||| |||||||||||||||||||||| ||  |||||||||| ||||||||||||| |||||    
T  31106093 tcacatttagtgcttatgtatgagcttacataagctaattttatagctaataatataatgaagttaaattatttttgtatatgttataag 31106182  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 20880404 - 20880474
Alignment:
Q  84 gcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 155  Q
    |||||||||| || ||||||| |||| ||||||||| ||| ||||||||| |||||||||||||||||||||    
T  20880404 gcttatgtataagcttacataagctatttttatagcaaatgataaaacaa-gttaaattgtttttgtatatg 20880474  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 1058220 - 1058146
Alignment:
Q  81 agcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 155  Q
    ||||||||||||| || ||||||| |||| ||||||||| ||| |||||| ||||||||  ||||||||||||||    
T  1058220 agcgcttatgtataagcttacataagctatttttatagcaaatcataaaataaagttaatctgtttttgtatatg 1058146  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 10758369 - 10758328
Alignment:
Q  114 tatagctaataataaaacaaagttaaattgtttttgtatatg 155  Q
    |||||| ||| |||||| ||||||||||||||||||||||||    
T  10758369 tatagcaaatcataaaataaagttaaattgtttttgtatatg 10758328  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 27976523 - 27976593
Alignment:
Q  85 cttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 155  Q
    ||||||||| || ||||||| |||| ||||||||| ||| ||  |||||||||||||||||||||||||||    
T  27976523 cttatgtataagcttacataagctatttttatagcaaatgattgaacaaagttaaattgtttttgtatatg 27976593  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 37473327 - 37473397
Alignment:
Q  85 cttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 155  Q
    ||||||||| || ||||||| |||| ||||||||| ||| ||||||||||||||| | |||| ||||||||    
T  37473327 cttatgtataagcttacataagctatttttatagcaaatgataaaacaaagttaagtcgtttatgtatatg 37473397  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 40252236 - 40252171
Alignment:
Q  98 ttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatgtcataagc 163  Q
    ||||||| |||| |||||| || ||| ||||||||||||||||| |||||||||||||| ||||||    
T  40252236 ttacataagctagttttattgcaaatgataaaacaaagttaaatcgtttttgtatatgttataagc 40252171  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 46078071 - 46078144
Alignment:
Q  81 agcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatat 154  Q
    ||||||||||||| || ||||||| | || ||||||||  ||  ||||||||||||||||||||||||||||||    
T  46078071 agcgcttatgtataagcttacataagttatttttatagaaaaagataaaacaaagttaaattgtttttgtatat 46078144  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 20269530 - 20269581
Alignment:
Q  111 ttttatagctaataataaaacaaagttaaattgtttttgtatatgtcataag 162  Q
    ||||||||| ||  ||||||||||||||||||||||||||| |||| |||||    
T  20269530 ttttatagcaaaagataaaacaaagttaaattgtttttgtaaatgttataag 20269581  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 8960740 - 8960698
Alignment:
Q  114 tatagctaataataaaacaaagttaaattgtttttgtatatgt 156  Q
    |||||| ||| |||||| |||||||||||||||||||||||||    
T  8960740 tatagcaaatgataaaataaagttaaattgtttttgtatatgt 8960698  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 28613636 - 28613599
Alignment:
Q  125 ataaaacaaagttaaattgtttttgtatatgtcataag 162  Q
    ||||||||||||||||||||||||||||| || |||||    
T  28613636 ataaaacaaagttaaattgtttttgtataagttataag 28613599  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 35445996 - 35446051
Alignment:
Q  98 ttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtata 153  Q
    ||||||| |||| ||||||||| ||| |||||| ||||||||||||||||||||||    
T  35445996 ttacataagctatttttatagcaaatgataaaataaagttaaattgtttttgtata 35446051  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 37112360 - 37112332
Alignment:
Q  125 ataaaacaaagttaaattgtttttgtata 153  Q
    |||||||||||||||||||||||||||||    
T  37112360 ataaaacaaagttaaattgtttttgtata 37112332  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 24626222 - 24626292
Alignment:
Q  84 gcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatat 154  Q
    |||||||||| || ||||||| |||| || |||||  ||  ||||||||||||||||||||||||||||||    
T  24626222 gcttatgtataagcttacataagctatttctataggaaaggataaaacaaagttaaattgtttttgtatat 24626292  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 30536405 - 30536475
Alignment:
Q  84 gcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatat 154  Q
    |||||||||| ||||| |||| |||| | ||||||| ||| |||||| || ||||||||||||||||||||    
T  30536405 gcttatgtataagtttgcataagctattattatagcaaatgataaaataatgttaaattgtttttgtatat 30536475  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 19494844 - 19494912
Alignment:
Q  87 tatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 155  Q
    ||||||| || ||||||| |||| || |||||| ||| |||||| |||| |||||||||||||||||||    
T  19494844 tatgtataaggttacataagctagttctatagcaaatgataaaataaagctaaattgtttttgtatatg 19494912  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 54069559 - 54069489
Alignment:
Q  85 cttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 155  Q
    ||||||||| || || ||||||||| ||||||| | ||  |||||| || |||||||||||||||||||||    
T  54069559 cttatgtataagcttgcatatgctatttttatatcaaaagataaaataatgttaaattgtttttgtatatg 54069489  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 17204064 - 17204136
Alignment:
Q  83 cgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 155  Q
    ||||||||| | || ||||||| |||  ||||||||| |||  ||||| ||||||| ||||||||||||||||    
T  17204064 cgcttatgtgttagcttacataagctgtttttatagcaaatgttaaaataaagttatattgtttttgtatatg 17204136  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 41336728 - 41336764
Alignment:
Q  125 ataaaacaaagttaaattgtttttgtatatgtcataa 161  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  41336728 ataaaataaagttaaattgtttttgtatatgttataa 41336764  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 42868606 - 42868534
Alignment:
Q  82 gcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatat 154  Q
    ||||||||| || |||||||||| |||| ||| ||||  ||  |||||| |||||||||||||||||||||||    
T  42868606 gcgcttatgcataagtttacataagctattttcatagaaaaagataaaataaagttaaattgtttttgtatat 42868534  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 45229439 - 45229511
Alignment:
Q  84 gcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatgt 156  Q
    |||||||||| |||||||||| |||| || |||||| ||  ||||||  | ||||||||||||||||||||||    
T  45229439 gcttatgtataagtttacataagctatttctatagcaaacgataaaatgaggttaaattgtttttgtatatgt 45229511  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 42659297 - 42659223
Alignment:
Q  81 agcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 155  Q
    ||||||||||||| || ||||||| |||| |||||| |  |||  ||||| ||||| ||||||||||||||||||    
T  42659297 agcgcttatgtataagcttacataagctatttttatggaaaatggtaaaataaagtgaaattgtttttgtatatg 42659223  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 41812231 - 41812162
Alignment:
Q  86 ttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 155  Q
    |||||||| || ||||||| |||| |||||| || |||  |||||  |||||||||||||||||||||||    
T  41812231 ttatgtataagcttacataagctatttttatggcaaatggtaaaatgaagttaaattgtttttgtatatg 41812162  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 13325498 - 13325566
Alignment:
Q  85 cttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtata 153  Q
    |||||||||||| | ||||| |||| ||||||||  ||| |||||| ||||||||||| |||| |||||    
T  13325498 cttatgtatgaggtaacataagctagttttatagaaaatgataaaataaagttaaattattttcgtata 13325566  T

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