View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_4 (Length: 509)
Name: NF10639_low_4
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_4 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 5169455 - 5169938
Alignment:
| Q |
18 |
tcttataacttaagaatttcttcctccttactagaatccaagtaactttacatcaatcacaatacatcgagtttaaactcactgaacttcacgagctgcg |
117 |
Q |
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| T |
5169455 |
tcttataacttaagaatttcttcctccttactagaatccaagtaactttacatcaatcacaatacatcgagtttaaactcaccgaacttcacgagct-cg |
5169553 |
T |
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| Q |
118 |
ttcaggtatcctcagtcctattctgggtaatgtcctcctacttagatacttgcttctaaacttgttacttccgggtggcacttcaagtctaaaacaaatc |
217 |
Q |
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| T |
5169554 |
ttcaggtatcctcagtcctattctgggtaatgtcctcctacttagatacatgcttctaaacttgttacttccgggtggcacttcaagtctaaaacaaatc |
5169653 |
T |
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| Q |
218 |
ctctagttacaatgttcatacttcggttacgcatactaatccaaccatactgtaaaatttcacaatcagcttagcttcattgtgacttcacggtcatcaa |
317 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5169654 |
ctctagttacaatgttcgtacttcggttacgcatactaatccaaccatactgtaaaatttcacaatcagcttagcttcattgtgacttcacggtcatcaa |
5169753 |
T |
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| Q |
318 |
gtcggaaactagtttgcgacatgctgcttaatctcatcttattactagtccttccttatccaaactcactttccctaagattccaaaagaatttagtcgt |
417 |
Q |
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| T |
5169754 |
gtcggaaactagtttgcgacatgctgcttaatctcatcttattactagtccttccttatccaaacccactttccctaagattccaaaagaatttagtcgt |
5169853 |
T |
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| Q |
418 |
ccgacttgcacgctaataacatgaaggttaacttcgttcctagatatcgtgctttcctttagacatacgccacctatttcttctc |
502 |
Q |
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| T |
5169854 |
ccgacttgcacgctaataacatgaaggttaacttcgttcctagatatcgtgctttcctttagacatacgccacctatttcttctc |
5169938 |
T |
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Back To:
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Target: scaffold0065 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 63944 - 64031
Alignment:
| Q |
21 |
tataacttaagaatttcttcctccttactagaatccaagtaactttacatcaatcacaatacatcgagtttaaactcactgaacttca |
108 |
Q |
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| T |
63944 |
tataacttgggaatttcttattccttactagaatccacgtaactttacaacagtcacgatacatcgagttttaactcaccgaacttca |
64031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 452
Target Start/End: Complemental strand, 20922148 - 20922069
Alignment:
| Q |
373 |
ttatccaaactcactttccctaagattccaaaagaatttagtcgtccgacttgcacgctaataacatgaaggttaacttc |
452 |
Q |
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|||||||||||||||| |||| | ||| | ||||||| |||| |||||||| || |||||||||| | ||||||||||| |
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| T |
20922148 |
ttatccaaactcacttctcctatggttctagaagaattaagtcttccgacttacatgctaataacaaggaggttaacttc |
20922069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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