View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_40 (Length: 224)
Name: NF10639_low_40
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41327194 - 41326987
Alignment:
| Q |
1 |
ttcagaacccgactctccctatgttacatatttggggaatgcgccggaacaatccatggcaacaatccagccttctggtgaggttcatctccttatcaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41327194 |
ttcagaacccgactctccctatgttacatatttggggaatgcgccggaacaatccatggcaacaatccagccttccggtgaggttcatctccttatcaaa |
41327095 |
T |
|
| Q |
101 |
atagagcagttgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttatttattggaaaagttttagc |
200 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41327094 |
atagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaagttttagc |
41326995 |
T |
|
| Q |
201 |
tttggtta |
208 |
Q |
| |
|
|||||||| |
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| T |
41326994 |
tttggtta |
41326987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 20910302 - 20910095
Alignment:
| Q |
1 |
ttcagaacccgactctccctatgttacatatttggggaatgcgccggaacaatccatggcaacaatccagccttctggtgaggttcatctccttatcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
20910302 |
ttcagaacccgactctccctatgttacagattttgggaatgcgccggaacaatccatggcaacaatccagccttccggtgaggttcctctccttatcaaa |
20910203 |
T |
|
| Q |
101 |
atagagcagttgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttatttattggaaaagttttagc |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20910202 |
atagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaagttttagc |
20910103 |
T |
|
| Q |
201 |
tttggtta |
208 |
Q |
| |
|
|||||||| |
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|
| T |
20910102 |
tttggtta |
20910095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 20924750 - 20924543
Alignment:
| Q |
1 |
ttcagaacccgactctccctatgttacatatttggggaatgcgccggaacaatccatggcaacaatccagccttctggtgaggttcatctccttatcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
20924750 |
ttcagaacccgactctccctatgttacagattttgggaatgcgccggaacaatccatggcaacaatccagccttccggtgaggttcctctccttatcaaa |
20924651 |
T |
|
| Q |
101 |
atagagcagttgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttatttattggaaaagttttagc |
200 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20924650 |
atagagcaattgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttattttttggaaaagttttagc |
20924551 |
T |
|
| Q |
201 |
tttggtta |
208 |
Q |
| |
|
|||||||| |
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|
| T |
20924550 |
tttggtta |
20924543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 42313326 - 42313211
Alignment:
| Q |
93 |
ttatcaaaatagagcagttgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatttatttatttattggaaaa |
192 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42313326 |
ttatcaaaatagagcaattgggttttcaggttttacagttttgaaccagttggtaaattggctcgattggtggttgttaatttatttattttttggaaaa |
42313227 |
T |
|
| Q |
193 |
gttttagctttggtta |
208 |
Q |
| |
|
|||||||||||||||| |
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| T |
42313226 |
gttttagctttggtta |
42313211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 42313548 - 42313455
Alignment:
| Q |
1 |
ttcagaacccgactctccctatgttacatatttggggaatgcgccggaacaatccatggcaacaatccagccttctggtgaggttcatctcctt |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
42313548 |
ttcagaacccgactctccctatgttacatatttggagaatgcaccggaacaatccatggcaacaatccagccttccggtgaggttcctctcctt |
42313455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 174
Target Start/End: Original strand, 53689708 - 53689786
Alignment:
| Q |
96 |
tcaaaatagagcagttgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatt |
174 |
Q |
| |
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||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
53689708 |
tcaaaatagagcaattgggttttcaagttctacagttttgaaccaattggtaaatttgctagattggtggttgttaatt |
53689786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 52311190 - 52311112
Alignment:
| Q |
96 |
tcaaaatagagcagttgggttttcaggttttacagttttgaaccaattggtaaattggctcgattggtggttgttaatt |
174 |
Q |
| |
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||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
52311190 |
tcaaaatagagcaattgggttttcaagttctgcagttttgaaccaattggtaaatttgctagattggtggttgttaatt |
52311112 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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