View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_43 (Length: 207)
Name: NF10639_low_43
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 47253908 - 47254076
Alignment:
| Q |
1 |
ggaacaaaattaaatctacaaattaaaacaagaacaaaatccgatacaagattttaatcatgaatatgatatttacctgtttcagctcataggtgttatc |
100 |
Q |
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| T |
47253908 |
ggaacaaaattaaatctacaaattaaaacaagaacaaaatctgatacaagattttaatcatgaatatgatatttacctgtttcagctcataggtgttatc |
47254007 |
T |
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| Q |
101 |
agtaatctggcagaaatcaacagcctttggtggggagatttcttcatactttctgcaaatttaaaaagt |
169 |
Q |
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| T |
47254008 |
agtaatctggcagaaatcaacagcctttggtggggagatttcttcatactttctgcaaatttaaaaagt |
47254076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 47249140 - 47249247
Alignment:
| Q |
59 |
catgaatatgatatttacctgtttcagctcataggtgttatcagtaatctggcagaaatcaacagcctttggtggggagatttcttcatactttctgcaa |
158 |
Q |
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| T |
47249140 |
catgaataggatatttacctcttccaggtcataggtgttatcagtaatttggcagaaatccactgcctttggtggggtaatttcttcatactttctgcat |
47249239 |
T |
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| Q |
159 |
atttaaaa |
166 |
Q |
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| T |
47249240 |
atttaaaa |
47249247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 47242737 - 47242807
Alignment:
| Q |
87 |
tcataggtgttatcagtaatctggcagaaatcaacagcctttggtggggagatttcttcatactttctgca |
157 |
Q |
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| T |
47242737 |
tcatatgtgttatcagtgatttggcagaaatctatggcctttggtggggtgatttcttcatacttcctgca |
47242807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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