View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10639_low_5 (Length: 446)

Name: NF10639_low_5
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10639_low_5
NF10639_low_5
[»] chr3 (5 HSPs)
chr3 (173-433)||(50513328-50513588)
chr3 (173-426)||(50565505-50565766)
chr3 (1-142)||(50513619-50513760)
chr3 (9-142)||(50565797-50565930)
chr3 (177-303)||(21525027-21525155)
[»] chr5 (7 HSPs)
chr5 (177-426)||(38924084-38924339)
chr5 (1-140)||(38924380-38924518)
chr5 (177-286)||(20227872-20227981)
chr5 (177-293)||(25238996-25239111)
chr5 (177-293)||(25303149-25303264)
chr5 (203-286)||(25235453-25235535)
chr5 (203-286)||(25299613-25299695)
[»] chr2 (1 HSPs)
chr2 (200-341)||(30680792-30680932)
[»] chr7 (1 HSPs)
chr7 (248-286)||(21915268-21915306)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 173 - 433
Target Start/End: Complemental strand, 50513588 - 50513328
Alignment:
Q  173 gcttaatcaaaagtaatggaagacatcaggaggcgtcaaaacatcccaactaagttttcactctaagaccagcttcatcctctgccaccatgctcataaa 272  Q
    ||||||||||||| ||||||||||||||||||||||||||| || | |||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  50513588 gcttaatcaaaagaaatggaagacatcaggaggcgtcaaaatattctaactaagttttcactccaagaccagcttcatcctctaccaccatgctcataaa 50513489  T
Q  273 attttattaaaaaagagaaaattgttcaagcggggcaaccaaactagaacctgcaaaataaaacagaaacaaaccagagacctatggagcccaacccggt 372  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  50513488 attttattaaaaaagagaaaattgtacaagcggggcaaccaaactagaacctgcaaaataaaacagaaacaaaccagagacctatggaggccaacccagt 50513389  T
Q  373 ctctgaaaaaatcctgaacatggccatgaattggttcagcaacaaacaaaatctttggtct 433  Q
    |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||    
T  50513388 ctctgaaaaaattctgaacatggccatgaattgctttagcaacaaacaaaatctttggtct 50513328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 173 - 426
Target Start/End: Complemental strand, 50565766 - 50565505
Alignment:
Q  173 gcttaatcaaaagtaatggaagacatcaggaggcgtcaaaacatcccaactaagttttcactctaagaccagcttcatcctctgccaccatgctcataaa 272  Q
    ||||||| ||||  |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  50565766 gcttaataaaaaccaatggaagacattaggaggcgtcaaaacatcccaactaagttttcactccaagaccagctccatcctctgccaccatgatcataaa 50565667  T
Q  273 attttattaaaaaagagaaaattgttcaagcggggcaaccaaactagaacctgcaaaataaaaca--------gaaacaaaccagagacctatggagccc 364  Q
    ||||||||||||||||||||||||| ||| |||||||||||||  |||||| |||||||||||||        |||||||| |  |||||||||||||||    
T  50565666 attttattaaaaaagagaaaattgtacaaccggggcaaccaaatcagaacccgcaaaataaaacagaaaaacagaaacaaaacgaagacctatggagccc 50565567  T
Q  365 aacccggtctctgaaaaaatcctgaacatggccatgaattggttcagcaacaaacaaaatct 426  Q
    |||||  ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50565566 aacccaatctctaaaaaaatcctgaacatgcccatgaattggttcagcaacaaacaaaatct 50565505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 50513760 - 50513619
Alignment:
Q  1 ttgtgtcttttttcttcttctctggagtcaactgaggaggatatcatggtacatagtttatccttttaactctagcacaccatgttcataagaaagtttt 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50513760 ttgtgtcttttttcttcttctctggagtcaactgagggggatatcatggtacatagtttatccttttaactctagcacaccatgttcataagaaagtttt 50513661  T
Q  101 atttgtgctcaaaacatatttcatatgcttcttaaatacaac 142  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  50513660 atttgtgctcaaaacatatttcatatgcctcttaaatacaac 50513619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 50565930 - 50565797
Alignment:
Q  9 tttttcttcttctctggagtcaactgaggaggatatcatggtacatagtttatccttttaactctagcacaccatgttcataagaaagttttatttgtgc 108  Q
    ||||| ||||||||||||||||||||||||||||||  |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50565930 ttttttttcttctctggagtcaactgaggaggatattgtggtgcataatttatccgtttaactctagcacaccatgttcataagaaagttttatttgtgc 50565831  T
Q  109 tcaaaacatatttcatatgcttcttaaatacaac 142  Q
    ||||||||||||||||||||||||||||||||||    
T  50565830 tcaaaacatatttcatatgcttcttaaatacaac 50565797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 303
Target Start/End: Original strand, 21525027 - 21525155
Alignment:
Q  177 aatcaaaagtaatggaagacatcaggaggcgtcaaaacatcccaactaagttttcactctaagaccagcttcatcctctgccaccatgctcataaaattt 276  Q
    |||||| || ||||||| ||||||||||| | ||| |||||| |||||  ||  |||   |||| || || |||||||||||||||||| ||||||||||    
T  21525027 aatcaatagcaatggaaaacatcaggaggagacaagacatccaaactagcttggcacctcaagatcacctccatcctctgccaccatgcccataaaattt 21525126  T
Q  277 tattaaaaaa--gagaaaattgttcaagc 303  Q
    ||||||||||  ||||||||||| |||||    
T  21525127 tattaaaaaaatgagaaaattgtacaagc 21525155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 177 - 426
Target Start/End: Complemental strand, 38924339 - 38924084
Alignment:
Q  177 aatcaaaagtaatggaagacatcaggaggcgtcaaaacatcccaactaagttttcactctaagaccagcttcatcctctgccaccatgctcataaaattt 276  Q
    ||||| ||| ||||||||||||  |||||||| || ||||||||||||||||  ||||| ||||||| || |||||||||||||||||||||||||||||    
T  38924339 aatcagaagcaatggaagacatttggaggcgttaagacatcccaactaagttgacactccaagaccacctccatcctctgccaccatgctcataaaattt 38924240  T
Q  277 tattaaaaaagagaaaattgttcaagcggggcaaccaaactagaacctgcaaaataaaa--------cagaaacaaaccagagacctatggagcccaacc 368  Q
    || | |||||||||||||||| |||||||| |||||||||||||||| |||||||||||        || |||||||||| ||||||| ||||||| | |    
T  38924239 ta-tcaaaaagagaaaattgtacaagcgggacaaccaaactagaacccgcaaaataaaacaaaaaagcataaacaaacca-agacctaaggagccccagc 38924142  T
Q  369 cggtctctgaaaaaatcctgaacatggccatgaattggttcagcaacaaacaaaatct 426  Q
    |||||||| |||||||| | | |||| |||||||| |||||| || ||||||||||||    
T  38924141 cggtctctaaaaaaatcattaccatgcccatgaataggttcaacagcaaacaaaatct 38924084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 38924518 - 38924380
Alignment:
Q  1 ttgtgtcttttttcttcttctctggagtcaactgaggaggatatcatggtacatagtttatccttttaactctagcacaccatgttcataagaaagtttt 100  Q
    |||||||||||||||||||||||||||||||| | ||| ||||  ||||  || |||| ||||| |||||| | ||||||| |||| |||||||||||||    
T  38924518 ttgtgtcttttttcttcttctctggagtcaacgg-ggaagatactatggcgcagagttgatcctattaactatcgcacaccttgtttataagaaagtttt 38924420  T
Q  101 atttgtgctcaaaacatatttcatatgcttcttaaataca 140  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  38924419 atttgtgctcaaaacatgtttcatatgcttcttaaataca 38924380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 20227981 - 20227872
Alignment:
Q  177 aatcaaaagtaatggaagacatcaggaggcgtcaaaacatcccaactaagttttcactctaagaccagcttcatcctctgccaccatgctcataaaattt 276  Q
    ||||||||| |||| || |||||| |||| | |||  ||||||||||| |||  ||||| |||| || || |||||||||||||||||||||||||||||    
T  20227981 aatcaaaagcaatgaaaaacatcatgaggagacaaggcatcccaactaggttgacactccaagatcacctgcatcctctgccaccatgctcataaaattt 20227882  T
Q  277 tattaaaaaa 286  Q
    ||||||||||    
T  20227881 tattaaaaaa 20227872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 25238996 - 25239111
Alignment:
Q  177 aatcaaaagtaatggaagacatcaggaggcgtcaaaacatcccaactaagttttcactctaagaccagcttcatcctctgccaccatgctcataaaattt 276  Q
    ||||||||| || |||||||| ||  |||| |||||||||| |||| |||||  ||| | |||| |  || || |||||||||||||||||  |||||||    
T  25238996 aatcaaaagcaaaggaagacagcaacaggcctcaaaacatctcaacaaagttggcaccccaagatcgcctcca-cctctgccaccatgctccgaaaattt 25239094  T
Q  277 tattaaaaaagagaaaa 293  Q
    ||||||||||| |||||    
T  25239095 tattaaaaaagggaaaa 25239111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 25303149 - 25303264
Alignment:
Q  177 aatcaaaagtaatggaagacatcaggaggcgtcaaaacatcccaactaagttttcactctaagaccagcttcatcctctgccaccatgctcataaaattt 276  Q
    ||||||||| || |||||||| ||  |||| |||||||||| |||| |||||  ||| | |||| |  || || |||||||||||||||||  |||||||    
T  25303149 aatcaaaagcaaaggaagacagcaacaggcctcaaaacatctcaacaaagttggcaccccaagatcgcctcca-cctctgccaccatgctccgaaaattt 25303247  T
Q  277 tattaaaaaagagaaaa 293  Q
    ||||||||||| |||||    
T  25303248 tattaaaaaagggaaaa 25303264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 25235453 - 25235535
Alignment:
Q  203 aggcgtcaaaacatcccaactaagttttcactctaagaccagcttcatcctctgccaccatgctcataaaattttattaaaaaa 286  Q
    |||||||||||||||||||| |||||  ||| | ||||||  || || || ||||||||||||||  |||||||||||||||||    
T  25235453 aggcgtcaaaacatcccaacaaagttggcaccccaagaccgcctcca-ccactgccaccatgctccgaaaattttattaaaaaa 25235535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 25299613 - 25299695
Alignment:
Q  203 aggcgtcaaaacatcccaactaagttttcactctaagaccagcttcatcctctgccaccatgctcataaaattttattaaaaaa 286  Q
    |||||||||||||||||||| |||||  ||| | ||||||  || || || ||||||||||||||  |||||||||||||||||    
T  25299613 aggcgtcaaaacatcccaacaaagttggcaccccaagaccgcctcca-ccactgccaccatgctccgaaaattttattaaaaaa 25299695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 200 - 341
Target Start/End: Original strand, 30680792 - 30680932
Alignment:
Q  200 aggaggcgtcaaaacatcccaactaagttttcactctaagaccagcttcatcctctgccaccatgctcataaaattttattaaaaaagagaaaattgttc 299  Q
    |||||||||||| ||||| |||||||| |  ||||| || || | || || |||||||||||| ||||||||||||||||||||||||||||||| || |    
T  30680792 aggaggcgtcaagacatctcaactaagatggcactccaaaactacctcca-cctctgccaccaagctcataaaattttattaaaaaagagaaaatggtac 30680890  T
Q  300 aagcggggcaaccaaactagaacctgcaaaataaaacagaaa 341  Q
    |||||| |  ||||||| ||||||||||||||||||||||||    
T  30680891 aagcggagggaccaaaccagaacctgcaaaataaaacagaaa 30680932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 21915268 - 21915306
Alignment:
Q  248 catcctctgccaccatgctcataaaattttattaaaaaa 286  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  21915268 catcctctgccaccatgctcataaagttttattaaaaaa 21915306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University