View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10639_low_6 (Length: 431)
Name: NF10639_low_6
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 32264818 - 32264413
Alignment:
| Q |
18 |
aagaaaaatcaaatattatatagttacgtgcagttatttgcatcttataattttatctactattattatttgtgtcacaataatcattggaatacttttt |
117 |
Q |
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|||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32264818 |
aagaaaaatcaaatattatacagttacttgcaattatttgcatcttataattttatctactattatt---tgtgtcacaataatcattggaatacttttt |
32264722 |
T |
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| Q |
118 |
ctatcaaaataaaaaataatcatagaaaaagtattcaatacaggttaaaaacaagttgtagattcaaccaagtccctctcccccttaatgttggtcttag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32264721 |
ctatcaaaataaaaaataatcatagaaaaagtattcaatacaggttataaacaagttgtagattcaaccaagtccctctcccccttaatgttggtcttag |
32264622 |
T |
|
| Q |
218 |
tttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaaaaccctgccctgatgactgcacgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32264621 |
tttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaaaacctcgccctgatgactgcacgg |
32264522 |
T |
|
| Q |
318 |
agcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccgcagtgtcgcaacatctttgatattgtgtactcattatatatgt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32264521 |
agcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccgtagtgtcgcaacatctttgatattgtgtactcattatatatgc |
32264422 |
T |
|
| Q |
418 |
gtctctgct |
426 |
Q |
| |
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|||| |||| |
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| T |
32264421 |
gtctgtgct |
32264413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 32255767 - 32255624
Alignment:
| Q |
18 |
aagaaaaatcaaatattatatagttacgtgcagttatttgcatcttataattttatctactattattatttgtgtcac-aataatcattggaatactttt |
116 |
Q |
| |
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|||| |||||||||||||||||||||| |||| ||| ||||||| ||||||||||| |||||| ||||||| |||| ||||||||||||||||||||| |
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| T |
32255767 |
aagagaaatcaaatattatatagttacttgcaattacttgcatcatataattttat---ctattactatttgtatcacaaataatcattggaatactttt |
32255671 |
T |
|
| Q |
117 |
tctatcaaaataaaaaataatcatagaaaaagtattcaatacaggtta |
164 |
Q |
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| T |
32255670 |
tcaatcaaaat-aaaaataatcatagaaaaagaattcaatacaggtta |
32255624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 199 - 374
Target Start/End: Complemental strand, 32255577 - 32255402
Alignment:
| Q |
199 |
cccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaaaaccc |
298 |
Q |
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|||||| |||||||||||||||| |||||| |||||| ||||||||||||| |||||| |||| ||| ||||| | |||||||||| ||||||||||| |
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| T |
32255577 |
cccttattgttggtcttagtttaggggaaagtttgtgaagctcacggaacagaatttttatgtcaagtgtgaggcacccaactagtgcccatgaaaaccc |
32255478 |
T |
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| Q |
299 |
tgccctgatgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccg |
374 |
Q |
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||||| ||||| ||| | |||| | ||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
32255477 |
cgccctaatgaccgcatgtagcattgcaatgtgttgagcccctggtgacatttgataagccagaacaatccaaccg |
32255402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 32249601 - 32249544
Alignment:
| Q |
351 |
tgataagccagaacaatccaaccgcagtgtcgcaacatctttgatattgtgtactcat |
408 |
Q |
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||||||||||||||||||||| | || |||||||||||||||||||||||||||| |
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| T |
32249601 |
tgataagccagaacaatccaatcatagcaccgcaacatctttgatattgtgtactcat |
32249544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 340
Target Start/End: Complemental strand, 23203314 - 23203167
Alignment:
| Q |
200 |
ccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgca-tgaaaaccc |
298 |
Q |
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|||||||| |||||| ||||| |||||| |||||| ||||||||||||| ||||||||| |||| ||| ||||| |||||||||||| ||||||| | |
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| T |
23203314 |
ccttaatgctggtctatgtttaggggaaagtttgtgaagctcacggaacatgtttttaatgtcaagcgcgaagcgctaaactagtgcgcattgaaaactc |
23203215 |
T |
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| Q |
299 |
tgccc------tgatgactgcacggagcactataatgtgttgagcccc |
340 |
Q |
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|||| | ||||| |||||||||||| |||||||||||||||| |
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| T |
23203214 |
cgccctaatattaatgaccgcacggagcactgtaatgtgttgagcccc |
23203167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 23203567 - 23203510
Alignment:
| Q |
18 |
aagaaaaatcaaatattatatagttacgtgcagttatttgcatc-ttataattttatc |
74 |
Q |
| |
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|||| |||||||| ||||||||||||| |||| ||||||||||| ||||||||||||| |
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| T |
23203567 |
aagagaaatcaaacattatatagttacttgcaattatttgcatctttataattttatc |
23203510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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