View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10639_low_7 (Length: 417)
Name: NF10639_low_7
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10639_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 25565601 - 25565203
Alignment:
| Q |
19 |
tatatgtgactaaaatgttttccagttnnnnnnnttaggaacttgaaacttcaatgtaattttcattagatatcattgtaatgtcattgaagttgttagt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25565601 |
tatatgtgactaaaatgttttccagttcaaaaaattaggaacttgaaacttcaatgtaattttcattagatatcattgtaatgtcattgaagttgttagt |
25565502 |
T |
|
| Q |
119 |
cttgaagatttgacaaaaggacttctattataaggttcttcacaaaccagtgctagtgcaatagagatcatcacaagactcgttcta----------ttg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25565501 |
cttgaagatttgacaaaaggacttctattataaggttcttcacaaactggtgctagtgcaatagagatcatcacaagactcgttctatgctgtcattttg |
25565402 |
T |
|
| Q |
209 |
gttcaaattttgttgtaaccaccttttcaaaaaatgttttgttgtaaccaaaaatcccctgacagaagctctgttcagttccatgaaatttaagaaataa |
308 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
25565401 |
gttcaaattttgttgtaatcaccttttcaaaaaaaaaattgttgtaaccaaaaatcccctgacagaagctctgttcagttgcatgaaatttaagaactaa |
25565302 |
T |
|
| Q |
309 |
tatacttgtgcagtgtctaattctgtcaagataaccattaatatcgatagttaatgatgatgacttacactgagtaatttatggatgaaggtgcctatg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
25565301 |
tatacttgtgcagtgtctaattctgtcaagataaccattaatatcgatagttaatgataatgacttacactgagtaatttatacatgaaggtacctatg |
25565203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University