View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10639_low_9 (Length: 414)

Name: NF10639_low_9
Description: NF10639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10639_low_9
NF10639_low_9
[»] chr2 (8 HSPs)
chr2 (20-346)||(4795104-4795438)
chr2 (337-374)||(34944416-34944453)
chr2 (341-412)||(2199978-2200050)
chr2 (341-374)||(6027618-6027651)
chr2 (341-374)||(11852189-11852222)
chr2 (341-373)||(1142997-1143029)
chr2 (334-374)||(2200244-2200284)
chr2 (334-374)||(44436825-44436865)
[»] chr5 (10 HSPs)
chr5 (341-412)||(14649188-14649256)
chr5 (341-412)||(21239099-21239170)
chr5 (338-409)||(23286443-23286514)
chr5 (336-374)||(19571943-19571981)
chr5 (341-374)||(22657768-22657801)
chr5 (341-374)||(27873349-27873382)
chr5 (341-374)||(40643094-40643127)
chr5 (334-374)||(4976294-4976334)
chr5 (334-374)||(9065172-9065212)
chr5 (341-373)||(40738410-40738442)
[»] chr3 (17 HSPs)
chr3 (336-410)||(27646274-27646348)
chr3 (341-410)||(1111616-1111685)
chr3 (338-374)||(33212394-33212430)
chr3 (332-375)||(11354542-11354585)
chr3 (332-374)||(34811306-34811348)
chr3 (333-374)||(2993251-2993292)
chr3 (341-374)||(6784727-6784760)
chr3 (341-374)||(21458982-21459015)
chr3 (341-374)||(24813602-24813635)
chr3 (341-374)||(28673298-28673331)
chr3 (341-410)||(31541027-31541096)
chr3 (341-374)||(50517526-50517559)
chr3 (341-374)||(53164163-53164196)
chr3 (341-374)||(54866537-54866570)
chr3 (347-375)||(39952534-39952562)
chr3 (341-373)||(42044257-42044289)
chr3 (334-374)||(53687001-53687041)
[»] scaffold0236 (1 HSPs)
scaffold0236 (341-374)||(17464-17497)
[»] chr4 (13 HSPs)
chr4 (335-412)||(13620820-13620897)
chr4 (332-412)||(26866829-26866909)
chr4 (338-374)||(55014972-55015008)
chr4 (341-374)||(3085445-3085478)
chr4 (341-374)||(26889903-26889936)
chr4 (341-374)||(28298375-28298408)
chr4 (341-374)||(36901114-36901147)
chr4 (341-374)||(39114891-39114924)
chr4 (334-374)||(17610024-17610064)
chr4 (338-374)||(28495377-28495413)
chr4 (338-374)||(53564360-53564396)
chr4 (330-366)||(54878027-54878063)
chr4 (338-374)||(55563131-55563167)
[»] scaffold0250 (1 HSPs)
scaffold0250 (341-405)||(9399-9463)
[»] scaffold0161 (1 HSPs)
scaffold0161 (336-412)||(3433-3508)
[»] chr7 (10 HSPs)
chr7 (334-410)||(17317435-17317510)
chr7 (340-374)||(19845673-19845707)
chr7 (341-374)||(7400129-7400162)
chr7 (341-374)||(9140537-9140570)
chr7 (341-374)||(19292839-19292872)
chr7 (341-374)||(21119557-21119590)
chr7 (341-374)||(22991748-22991781)
chr7 (341-374)||(27529229-27529262)
chr7 (341-374)||(29629716-29629749)
chr7 (341-374)||(41444467-41444500)
[»] scaffold0674 (1 HSPs)
scaffold0674 (331-374)||(5141-5184)
[»] scaffold0549 (1 HSPs)
scaffold0549 (331-374)||(10186-10229)
[»] scaffold0240 (1 HSPs)
scaffold0240 (331-374)||(18487-18530)
[»] chr1 (5 HSPs)
chr1 (333-412)||(21631073-21631152)
chr1 (344-374)||(51467476-51467506)
chr1 (341-374)||(3934606-3934639)
chr1 (341-374)||(22567066-22567099)
chr1 (338-374)||(25284071-25284107)
[»] chr8 (4 HSPs)
chr8 (341-374)||(4778591-4778624)
chr8 (341-374)||(41898500-41898533)
chr8 (338-374)||(44502617-44502653)
chr8 (338-374)||(45283796-45283832)
[»] chr6 (2 HSPs)
chr6 (341-374)||(9341838-9341871)
chr6 (384-412)||(23604505-23604533)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 4795438 - 4795104
Alignment:
Q  20 ggtgcaaatggagttaggggtggatgaagaagagcaacagggggaggatgaggaagaaggttgagaaaaagaagtaattagtggagagtaactacaacgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4795438 ggtgcaaatggagttaggggtggatgaagaagagcaacagggggaggatgaggaagaaggttgagaaaaagaagtaattagtggagagtaactacaacgc 4795339  T
Q  120 gcgtaaatcaaaggggatgatgctgccatatagcaaaggaacgaaaactttccaaataattgtatctatttgctttcaattttaaactaagttccagtgg 219  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4795338 gcgtaaataaaaggggatgatgctgccatatagcaaaggaacgaaaactttccaaataattgtatctatttgctttcaattttaaactaagttccagtgg 4795239  T
Q  220 ttgttgtgtcat-----aacaaaatcgttgttcatttttcagagtcattcgtgtgttgtgaattt---tgagccagatgagctgggatggctagtgccaa 311  Q
    ||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  4795238 ttgttgtgtcataacataacaaaatcgttgttcatttttcagagtcattcgtgtgttgtgaattttgatgagccagatgagctgggatggctagtgccaa 4795139  T
Q  312 ccaatcagttcacgacacataatatttattactat 346  Q
    |||||||||||||||||| ||||||||||||||||    
T  4795138 ccaatcagttcacgacacctaatatttattactat 4795104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 374
Target Start/End: Complemental strand, 34944453 - 34944416
Alignment:
Q  337 ttattactatctccgtccctaattataagatccttttg 374  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  34944453 ttattactatctccgtccctaattataagatccctttg 34944416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 2199978 - 2200050
Alignment:
Q  341 tactatctccgtccctaattataagatcctttt-gtnnnnnnnntttgtctctttttataagacccctttgct 412  Q
    ||||| |||||||||||||||||||| |||||| ||        |||||||||||||||||||||||||||||    
T  2199978 tactacctccgtccctaattataagaccctttttgtgaattttttttgtctctttttataagacccctttgct 2200050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 6027618 - 6027651
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  6027618 tactacctccgtccctaattataagatccttttg 6027651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 11852222 - 11852189
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  11852222 tactacctccgtccctaattataagatccttttg 11852189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 373
Target Start/End: Original strand, 1142997 - 1143029
Alignment:
Q  341 tactatctccgtccctaattataagatcctttt 373  Q
    ||||| |||||||||||||||||||||||||||    
T  1142997 tactacctccgtccctaattataagatcctttt 1143029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 2200284 - 2200244
Alignment:
Q  334 tatttattactatctccgtccctaattataagatccttttg 374  Q
    |||||| ||||| |||||||||||||||||||| |||||||    
T  2200284 tatttactactacctccgtccctaattataagacccttttg 2200244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 44436865 - 44436825
Alignment:
Q  334 tatttattactatctccgtccctaattataagatccttttg 374  Q
    |||||||||||| ||||||||||||| |||||| |||||||    
T  44436865 tatttattactacctccgtccctaatgataagacccttttg 44436825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 14649188 - 14649256
Alignment:
Q  341 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgct 412  Q
    ||||| |||||||||||||||||||||||||||||        ||| |||||||||||||||||||||||||    
T  14649188 tactacctccgtccctaattataagatccttttgt---gattttttttctctttttataagacccctttgct 14649256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 21239099 - 21239170
Alignment:
Q  341 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgct 412  Q
    ||||| ||||||||||||||| |||| |||||||         |||||||||||||||||||||||||||||    
T  21239099 tactacctccgtccctaattagaagacccttttgagaattttttttgtctctttttataagacccctttgct 21239170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 23286514 - 23286443
Alignment:
Q  338 tattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagaccccttt 409  Q
    |||||||| |||||||||||||||||||| |||||||         |||||| |||||||||||||||||||    
T  23286514 tattactacctccgtccctaattataagacccttttgagaattttttttgtccctttttataagaccccttt 23286443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 374
Target Start/End: Complemental strand, 19571981 - 19571943
Alignment:
Q  336 tttattactatctccgtccctaattataagatccttttg 374  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  19571981 tttattactacctccgtccctaattataagacccttttg 19571943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 22657768 - 22657801
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  22657768 tactacctccgtccctaattataagatccttttg 22657801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 27873382 - 27873349
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    |||||||||||||||||||||||||| |||||||    
T  27873382 tactatctccgtccctaattataagacccttttg 27873349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 40643094 - 40643127
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  40643094 tactacctccgtccctaattataagatccttttg 40643127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 4976334 - 4976294
Alignment:
Q  334 tatttattactatctccgtccctaattataagatccttttg 374  Q
    |||||| ||||| |||||||||||||||||||| |||||||    
T  4976334 tatttagtactacctccgtccctaattataagacccttttg 4976294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 9065212 - 9065172
Alignment:
Q  334 tatttattactatctccgtccctaattataagatccttttg 374  Q
    |||||| |||||||||||||||||||||||||  |||||||    
T  9065212 tatttagtactatctccgtccctaattataaggcccttttg 9065172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 373
Target Start/End: Original strand, 40738410 - 40738442
Alignment:
Q  341 tactatctccgtccctaattataagatcctttt 373  Q
    ||||| |||||||||||||||||||||||||||    
T  40738410 tactacctccgtccctaattataagatcctttt 40738442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 410
Target Start/End: Complemental strand, 27646348 - 27646274
Alignment:
Q  336 tttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttg 410  Q
    |||| ||||| ||||||||||||||||||||||||||||         |||||||||||||||||||||| ||||    
T  27646348 tttactactacctccgtccctaattataagatccttttgagaaatttttttgtctctttttataagacccttttg 27646274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 410
Target Start/End: Complemental strand, 1111685 - 1111616
Alignment:
Q  341 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttg 410  Q
    |||||||||||||||||||||||||| |||||||         |||||||||||||||||||||| ||||    
T  1111685 tactatctccgtccctaattataagacccttttgagaaatttttttgtctctttttataagacccttttg 1111616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 33212394 - 33212430
Alignment:
Q  338 tattactatctccgtccctaattataagatccttttg 374  Q
    |||||||| ||||||||||||||||||||||||||||    
T  33212394 tattactacctccgtccctaattataagatccttttg 33212430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 375
Target Start/End: Original strand, 11354542 - 11354585
Alignment:
Q  332 aatatttattactatctccgtccctaattataagatccttttgt 375  Q
    ||||| |||||||| ||||||||| |||||||||||||||||||    
T  11354542 aatatatattactaactccgtcccaaattataagatccttttgt 11354585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 374
Target Start/End: Original strand, 34811306 - 34811348
Alignment:
Q  332 aatatttattactatctccgtccctaattataagatccttttg 374  Q
    |||||||| || || ||||||||||||||||||||||||||||    
T  34811306 aatatttaatattacctccgtccctaattataagatccttttg 34811348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 2993251 - 2993292
Alignment:
Q  333 atatttattactatctccgtccctaattataagatccttttg 374  Q
    ||||||| ||||| |||||||||||||||||||||| |||||    
T  2993251 atatttaatactacctccgtccctaattataagatcattttg 2993292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 6784760 - 6784727
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    |||||||||||||||||||||||||| |||||||    
T  6784760 tactatctccgtccctaattataagacccttttg 6784727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 21458982 - 21459015
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  21458982 tactacctccgtccctaattataagatccttttg 21459015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 24813602 - 24813635
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  24813602 tactacctccgtccctaattataagatccttttg 24813635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 28673331 - 28673298
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  28673331 tactacctccgtccctaattataagatccttttg 28673298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 410
Target Start/End: Original strand, 31541027 - 31541096
Alignment:
Q  341 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttg 410  Q
    |||||||||||||||||||||||||||| ||||          |||||| ||||||||||||||||||||    
T  31541027 tactatctccgtccctaattataagatcattttaaaaaaataatttgtccctttttataagacccctttg 31541096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 50517559 - 50517526
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  50517559 tactacctccgtccctaattataagatccttttg 50517526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 53164163 - 53164196
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  53164163 tactacctccgtccctaattataagatccttttg 53164196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 54866570 - 54866537
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  54866570 tactacctccgtccctaattataagatccttttg 54866537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 375
Target Start/End: Complemental strand, 39952562 - 39952534
Alignment:
Q  347 ctccgtccctaattataagatccttttgt 375  Q
    |||||||||||||||||||||||||||||    
T  39952562 ctccgtccctaattataagatccttttgt 39952534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 42044289 - 42044257
Alignment:
Q  341 tactatctccgtccctaattataagatcctttt 373  Q
    ||||| |||||||||||||||||||||||||||    
T  42044289 tactacctccgtccctaattataagatcctttt 42044257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 53687041 - 53687001
Alignment:
Q  334 tatttattactatctccgtccctaattataagatccttttg 374  Q
    |||||||||||||||| |||| ||||||||||| |||||||    
T  53687041 tatttattactatctctgtccataattataagacccttttg 53687001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 17464 - 17497
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||||||||||||||||||||||||||||||||    
T  17464 tactatctccgtccctaattataagatccttttg 17497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 13620897 - 13620820
Alignment:
Q  335 atttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgct 412  Q
    |||| |||||| ||||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||    
T  13620897 atttgttactacctccgtccctaattataagatccttttgaaaaaaaaaattgtccctttttataagacccctttgct 13620820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 26866909 - 26866829
Alignment:
Q  332 aatatttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgct 412  Q
    ||||| || ||||| |||||||| ||||||||||| |||||||         |||||||||||||||||||||||||||||    
T  26866909 aatatatagtactacctccgtccttaattataagacccttttgagaattttttttgtctctttttataagacccctttgct 26866829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 55015008 - 55014972
Alignment:
Q  338 tattactatctccgtccctaattataagatccttttg 374  Q
    ||||||||||||||||| |||||||||||||||||||    
T  55015008 tattactatctccgtccataattataagatccttttg 55014972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 3085445 - 3085478
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  3085445 tactacctccgtccctaattataagatccttttg 3085478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 26889936 - 26889903
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  26889936 tactacctccgtccctaattataagatccttttg 26889903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 28298408 - 28298375
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  28298408 tactacctccgtccctaattataagatccttttg 28298375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 36901147 - 36901114
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  36901147 tactacctccgtccctaattataagatccttttg 36901114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 39114924 - 39114891
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  39114924 tactacctccgtccctaattataagatccttttg 39114891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 374
Target Start/End: Complemental strand, 17610064 - 17610024
Alignment:
Q  334 tatttattactatctccgtccctaattataagatccttttg 374  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  17610064 tatttaatactccctccgtccctaattataagatccttttg 17610024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 28495377 - 28495413
Alignment:
Q  338 tattactatctccgtccctaattataagatccttttg 374  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  28495377 tattactacctctgtccctaattataagatccttttg 28495413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 53564396 - 53564360
Alignment:
Q  338 tattactatctccgtccctaattataagatccttttg 374  Q
    |||||||| |||||||||||||||||||| |||||||    
T  53564396 tattactacctccgtccctaattataagacccttttg 53564360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 54878063 - 54878027
Alignment:
Q  330 ataatatttattactatctccgtccctaattataaga 366  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  54878063 ataatattaattactacctccgtccctaattataaga 54878027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 55563167 - 55563131
Alignment:
Q  338 tattactatctccgtccctaattataagatccttttg 374  Q
    |||||||| |||||||||||||||||||| |||||||    
T  55563167 tattactacctccgtccctaattataagacccttttg 55563131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 405
Target Start/End: Complemental strand, 9463 - 9399
Alignment:
Q  341 tactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagaccc 405  Q
    ||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||    
T  9463 tactacctccgtccctaattataagatccttttgagaattttttttgtctctttttataagaccc 9399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 412
Target Start/End: Original strand, 3433 - 3508
Alignment:
Q  336 tttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgct 412  Q
    |||||||||| |||||||||||||||||||| |||||||         |||||| ||||||||||||||||||||||    
T  3433 tttattactacctccgtccctaattataagacccttttg-agaatttttttgtccctttttataagacccctttgct 3508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 410
Target Start/End: Original strand, 17317435 - 17317510
Alignment:
Q  334 tatttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttg 410  Q
    |||||||||||  ||||||||||||||||||||||||||||         |||||| ||||||||||||||||||||    
T  17317435 tatttattactc-ctccgtccctaattataagatccttttgagaattttttttgtccctttttataagacccctttg 17317510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 374
Target Start/End: Complemental strand, 19845707 - 19845673
Alignment:
Q  340 ttactatctccgtccctaattataagatccttttg 374  Q
    |||||| ||||||||||||||||||||||||||||    
T  19845707 ttactacctccgtccctaattataagatccttttg 19845673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 7400129 - 7400162
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  7400129 tactacctccgtccctaattataagatccttttg 7400162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 9140570 - 9140537
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    |||||||||||||||||||||||||| |||||||    
T  9140570 tactatctccgtccctaattataagacccttttg 9140537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 19292839 - 19292872
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  19292839 tactacctccgtccctaattataagatccttttg 19292872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 21119557 - 21119590
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  21119557 tactacctccgtccctaattataagatccttttg 21119590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 22991781 - 22991748
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  22991781 tactacctccgtccctaattataagatccttttg 22991748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 27529229 - 27529262
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  27529229 tactacctccgtccctaattataagatccttttg 27529262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 29629716 - 29629749
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    |||||||||||||||||||||||||| |||||||    
T  29629716 tactatctccgtccctaattataagaaccttttg 29629749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 41444500 - 41444467
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  41444500 tactacctccgtccctaattataagatccttttg 41444467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 374
Target Start/End: Original strand, 5141 - 5184
Alignment:
Q  331 taatatttattactatctccgtccctaattataagatccttttg 374  Q
    |||| |||||||||| |||||||||||||||||||| |||||||    
T  5141 taatgtttattactacctccgtccctaattataagacccttttg 5184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 374
Target Start/End: Complemental strand, 10229 - 10186
Alignment:
Q  331 taatatttattactatctccgtccctaattataagatccttttg 374  Q
    |||| |||||||||| |||||||||||||||||||| |||||||    
T  10229 taatgtttattactacctccgtccctaattataagacccttttg 10186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 374
Target Start/End: Original strand, 18487 - 18530
Alignment:
Q  331 taatatttattactatctccgtccctaattataagatccttttg 374  Q
    |||| |||||||||| |||||||||||||||||||| |||||||    
T  18487 taatgtttattactacctccgtccctaattataagacccttttg 18530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 412
Target Start/End: Complemental strand, 21631152 - 21631073
Alignment:
Q  333 atatttattactatctccgtccctaattataagatccttttgtnnnnnnnntttgtctctttttataagacccctttgct 412  Q
    |||| |||||||| |||||||||||||||||||| |||||||          ||||| ||||||||||||||||||||||    
T  21631152 atatatattactacctccgtccctaattataagacccttttgaagaaacaaattgtccctttttataagacccctttgct 21631073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 374
Target Start/End: Complemental strand, 51467506 - 51467476
Alignment:
Q  344 tatctccgtccctaattataagatccttttg 374  Q
    |||||||||||||||||||||||||||||||    
T  51467506 tatctccgtccctaattataagatccttttg 51467476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 3934606 - 3934639
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  3934606 tactacctccgtccctaattataagatccttttg 3934639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 22567066 - 22567099
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  22567066 tactacctccgtccctaattataagatccttttg 22567099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 25284107 - 25284071
Alignment:
Q  338 tattactatctccgtccctaattataagatccttttg 374  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  25284107 tattactacctccgtccctaattataggatccttttg 25284071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 4778591 - 4778624
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||||||||||| ||||||||||||||||||||    
T  4778591 tactatctccgtctctaattataagatccttttg 4778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Complemental strand, 41898533 - 41898500
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  41898533 tactacctccgtccctaattataagatccttttg 41898500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 44502617 - 44502653
Alignment:
Q  338 tattactatctccgtccctaattataagatccttttg 374  Q
    |||||||  ||||||||||||||||||||||||||||    
T  44502617 tattactccctccgtccctaattataagatccttttg 44502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 45283832 - 45283796
Alignment:
Q  338 tattactatctccgtccctaattataagatccttttg 374  Q
    |||||||| |||||||||||||||||||| |||||||    
T  45283832 tattactacctccgtccctaattataagacccttttg 45283796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 9341838 - 9341871
Alignment:
Q  341 tactatctccgtccctaattataagatccttttg 374  Q
    ||||| ||||||||||||||||||||||||||||    
T  9341838 tactacctccgtccctaattataagatccttttg 9341871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 412
Target Start/End: Original strand, 23604505 - 23604533
Alignment:
Q  384 tttgtctctttttataagacccctttgct 412  Q
    |||||||||||||||||||||||||||||    
T  23604505 tttgtctctttttataagacccctttgct 23604533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University