View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1063_high_13 (Length: 454)

Name: NF1063_high_13
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1063_high_13
NF1063_high_13
[»] chr3 (7 HSPs)
chr3 (29-307)||(39838002-39838277)
chr3 (300-454)||(39838354-39838504)
chr3 (246-301)||(4139380-4139435)
chr3 (255-302)||(11602206-11602253)
chr3 (255-302)||(8393561-8393608)
chr3 (255-301)||(26777892-26777938)
chr3 (255-295)||(53800504-53800544)
[»] chr7 (3 HSPs)
chr7 (29-116)||(22059244-22059331)
chr7 (255-301)||(4848347-4848393)
chr7 (255-301)||(688062-688108)
[»] chr5 (2 HSPs)
chr5 (226-284)||(22913198-22913256)
chr5 (255-300)||(34727377-34727422)
[»] chr8 (3 HSPs)
chr8 (248-301)||(4466455-4466508)
chr8 (255-295)||(7389203-7389243)
chr8 (255-295)||(25616540-25616580)
[»] chr4 (3 HSPs)
chr4 (248-301)||(2116088-2116141)
chr4 (255-301)||(12682797-12682843)
chr4 (255-295)||(46104184-46104224)
[»] scaffold0051 (1 HSPs)
scaffold0051 (255-303)||(62059-62107)
[»] chr6 (2 HSPs)
chr6 (255-301)||(4107953-4107999)
chr6 (255-301)||(6969337-6969383)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 39838002 - 39838277
Alignment:
Q  29 cttattcctgataaacacttcaaaacaaaagttctttaactctcaagaaaataacatacacacggaaaaactataagagcgagcatttacttatgttttt 128  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39838002 cttattcctgctaaacacttcaaaacaaaagttctttaactctcaagaaaataacataaacacggaaaaactataagagcgagcatttacttatgttttt 39838101  T
Q  129 gaaacccctctctgtcccgttctgttttgg---nnnnnnnnnnctccatcaacaaaaacaacacnnnnnnnnnnnnnnnggcagcgcaactccaattaaa 225  Q
    ||||| ||||||||||||||||||||||||             |||||||||||||||||||||               ||||| ||| ||||||||||     
T  39838102 gaaactcctctctgtcccgttctgttttggttttttttcttttctccatcaacaaaaacaacac------atatatataggcagggcagctccaattaac 39838195  T
Q  226 taatttaccataataccttcaataaggataaaatggtaaaatcaacgaacattgacttttatattagtatatagatatccta 307  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  39838196 taatttaccataataccttcaataagggtaaaatggtaaaatcaacggacattaacttttatattagtatatagatatccta 39838277  T

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Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 300 - 454
Target Start/End: Original strand, 39838354 - 39838504
Alignment:
Q  300 atatcctatatgttttatgatgttatttttcttttaataagttgatgaaaatctatcaatttaatccctaagatcttcatagaatggataattacattga 399  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||    
T  39838354 atatcctatatgttttatgatgttatttttcttt-aataagttgatgaaaatctatcaatttaatccctaacatcttcatagaatggata---acattga 39838449  T
Q  400 caaattttaattagtacaccaaaattattttttaattactagttagtactgtata 454  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  39838450 caaattttaagtaggacaccaaaattattttttaattactagttagtactgtata 39838504  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 4139380 - 4139435
Alignment:
Q  246 aataaggataaaatggtaaaatcaacgaacattgacttttatattagtatatagat 301  Q
    |||| ||| |||||||||||||||| | ||||| ||||||||||||||||||||||    
T  4139380 aatagggacaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4139435  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 11602206 - 11602253
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtatatagata 302  Q
    |||||||||||||||||| |||| || |||||||||||||||||||||    
T  11602206 aaaatggtaaaatcaacggacatggatttttatattagtatatagata 11602253  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 302
Target Start/End: Complemental strand, 8393608 - 8393561
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtatatagata 302  Q
    ||||||||||| |||| | ||||| |||||||||||||||||||||||    
T  8393608 aaaatggtaaattcaaaggacattaacttttatattagtatatagata 8393561  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 26777892 - 26777938
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtatatagat 301  Q
    |||||||||||||||| | || || ||||||||||||||||||||||    
T  26777892 aaaatggtaaaatcaatggacgttaacttttatattagtatatagat 26777938  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 53800544 - 53800504
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtat 295  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  53800544 aaaatggtaaaatcaatggacattaacttttatattagtat 53800504  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 22059331 - 22059244
Alignment:
Q  29 cttattcctgataaacacttcaaaacaaaagttctttaactctcaagaaaataacatacacacggaaaaactataagagcgagcattt 116  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||| |||||||||||||  |  ||||| | |||||||||| |||||    
T  22059331 cttattcctgtcaaacacttcaaaacaaaagatctttaactctcaggaaaataacatacttaaagaaaagcaataagagcgatcattt 22059244  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 4848393 - 4848347
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtatatagat 301  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||    
T  4848393 aaaatggtaaaatcaatggacattaacttttatattagtatatagat 4848347  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 688108 - 688062
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtatatagat 301  Q
    ||||||||||| |||| | ||||| ||||||||||||||||||||||    
T  688108 aaaatggtaaattcaaaggacattaacttttatattagtatatagat 688062  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 22913256 - 22913198
Alignment:
Q  226 taatttaccataataccttcaataaggataaaatggtaaaatcaacgaacattgacttt 284  Q
    |||||||||||||||||  |||||||||||||||||||||||||||| ||||| |||||    
T  22913256 taatttaccataatacccccaataaggataaaatggtaaaatcaacggacattaacttt 22913198  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 34727377 - 34727422
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtatataga 300  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||    
T  34727377 aaaatggtaaaatcaatggacattaacttttatattagtatataga 34727422  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 4466455 - 4466508
Alignment:
Q  248 taaggataaaatggtaaaatcaacgaacattgacttttatattagtatatagat 301  Q
    ||||| ||||||||||||||||| | ||||| ||||||||||||||||||||||    
T  4466455 taagggtaaaatggtaaaatcaatggacattaacttttatattagtatatagat 4466508  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 7389243 - 7389203
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtat 295  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  7389243 aaaatggtaaaatcaatggacattaacttttatattagtat 7389203  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 25616540 - 25616580
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtat 295  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  25616540 aaaatggtaaaatcaatggacattaacttttatattagtat 25616580  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 2116141 - 2116088
Alignment:
Q  248 taaggataaaatggtaaaatcaacgaacattgacttttatattagtatatagat 301  Q
    |||||| |||||||||||||||| | ||||| ||||||||||||||||||||||    
T  2116141 taaggacaaaatggtaaaatcaatggacattaacttttatattagtatatagat 2116088  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 12682797 - 12682843
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtatatagat 301  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||    
T  12682797 aaaatggtaaaatcaatggacattaacttttatattagtatatagat 12682843  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 46104224 - 46104184
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtat 295  Q
    |||||||||||||||| | ||||| ||||||||||||||||    
T  46104224 aaaatggtaaaatcaatggacattaacttttatattagtat 46104184  T

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Target: scaffold0051 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 62107 - 62059
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtatatagatat 303  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||||    
T  62107 aaaatggtaaaatcaatggacattaacttttatattagtatatagatat 62059  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 4107999 - 4107953
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtatatagat 301  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||    
T  4107999 aaaatggtaaaatcaatggacattaacttttatattagtatatagat 4107953  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 6969337 - 6969383
Alignment:
Q  255 aaaatggtaaaatcaacgaacattgacttttatattagtatatagat 301  Q
    ||||||||||| |||| | ||||| ||||||||||||||||||||||    
T  6969337 aaaatggtaaattcaagggacattaacttttatattagtatatagat 6969383  T

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