View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1063_high_21 (Length: 301)
Name: NF1063_high_21
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1063_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 8048007 - 8048298
Alignment:
| Q |
1 |
aatgaaataaggaaacaagaacaaagagataatattaccgggataaagtttcgttaactaaatcatctaatgtttttccttgatcgattatatacatctc |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8048007 |
aatgaaataaggaaacaaaaacaaagagataatattaccggaataaagtttcgttaactaaatcatctaatgtttttccttgatcgattatatactcctc |
8048106 |
T |
|
| Q |
101 |
ttatttcaattatatattcatttgtcgctcatcgtatgtttctatatctaacaaaggctgtgagatccattatttctattaacttcctatgcccagctca |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
8048107 |
ttattttaattatatattcatttgtcgctcctcgtatgtttctatgtctaacaaaggctgtgagatctattatttctattaacttcctatgtccagctca |
8048206 |
T |
|
| Q |
201 |
gttatatataaatacattgacattaagatccaataatgtatgtgattataaatctagtcggatatctcacaactagcattcaaaagtataat |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8048207 |
gttatatataaatacattgacattaagatccaataatgtatgtgattataaatctagtcggatatctcacaactagcattcaaaaatataat |
8048298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 30741464 - 30741404
Alignment:
| Q |
50 |
ttcgttaactaaatcatctaatgtttttccttgatcgattatatacatctcttatttcaatt |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||| ||||| ||| |||||||||| |
|
|
| T |
30741464 |
ttcgttaactaa-tcatctaatgtttttccttaatcgattttatactcctcctatttcaatt |
30741404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 49588822 - 49588782
Alignment:
| Q |
74 |
ttttccttgatcgattatatacatctcttatttcaattata |
114 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49588822 |
tttttcttgatcgattatatactcctcttatttcaattata |
49588782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 35407996 - 35407908
Alignment:
| Q |
5 |
aaataaggaaacaagaacaaagagataatattaccgggataaagtttcgttaactaaatcatctaatgtttttccttgatcgattatata |
94 |
Q |
| |
|
||||||||||| ||||| | | |||||||||| || || |||||||||||||||| ||||||||| | ||||||||||||||| |||| |
|
|
| T |
35407996 |
aaataaggaaataagaatataaagataatattgttggaattaagtttcgttaactaa-tcatctaatatctttccttgatcgattgtata |
35407908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 31984788 - 31984690
Alignment:
| Q |
20 |
aacaaagagataatattaccgggataaagtttcgttaactaaatcatctaatgtttttccttgatcgattatatacatctcttatttcaattatatattc |
119 |
Q |
| |
|
|||||| |||||||||| ||||| |||||| |||||| || ||||||||| || ||||||| |||||||| || ||||||||||||| |||||| ||| |
|
|
| T |
31984788 |
aacaaaaagataatattgtcgggactaagttttgttaaccaa-tcatctaattttcttccttggtcgattattta-atctcttatttcagttatattttc |
31984691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 55576210 - 55576160
Alignment:
| Q |
64 |
catctaatgtttttccttgatcgattatatacatctcttatttcaattata |
114 |
Q |
| |
|
|||||||| | |||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
55576210 |
catctaatctctttccttgatagattatatactcctcttatttcaattata |
55576160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University