View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1063_high_24 (Length: 289)

Name: NF1063_high_24
Description: NF1063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1063_high_24
NF1063_high_24
[»] chr4 (6 HSPs)
chr4 (12-230)||(28287643-28287864)
chr4 (80-133)||(2880167-2880219)
chr4 (53-146)||(22716605-22716700)
chr4 (53-146)||(22988517-22988612)
chr4 (32-142)||(54239533-54239644)
chr4 (53-133)||(13085152-13085234)
[»] chr7 (4 HSPs)
chr7 (32-142)||(32052968-32053078)
chr7 (50-142)||(22572440-22572533)
chr7 (53-133)||(31577243-31577324)
chr7 (50-161)||(32936790-32936905)
[»] chr6 (3 HSPs)
chr6 (50-142)||(8568642-8568735)
chr6 (53-137)||(11190446-11190530)
chr6 (50-142)||(27142528-27142621)
[»] chr5 (5 HSPs)
chr5 (32-142)||(35160779-35160890)
chr5 (50-142)||(7775361-7775454)
chr5 (53-142)||(19677182-19677272)
chr5 (62-110)||(14504075-14504124)
chr5 (32-123)||(15385025-15385117)
[»] chr2 (4 HSPs)
chr2 (32-142)||(5841230-5841341)
chr2 (53-133)||(8781461-8781541)
chr2 (53-137)||(44675278-44675363)
chr2 (83-141)||(18725646-18725704)
[»] scaffold0251 (1 HSPs)
scaffold0251 (49-131)||(8218-8301)
[»] chr8 (3 HSPs)
chr8 (32-138)||(9295260-9295367)
chr8 (32-142)||(15081497-15081608)
chr8 (53-133)||(18180743-18180825)
[»] chr3 (6 HSPs)
chr3 (50-123)||(1151147-1151220)
chr3 (50-142)||(25340134-25340227)
chr3 (49-146)||(20398447-20398545)
chr3 (53-133)||(4580510-4580591)
chr3 (53-133)||(19949950-19950031)
chr3 (53-133)||(41218751-41218832)
[»] chr1 (4 HSPs)
chr1 (53-140)||(45085694-45085782)
chr1 (81-142)||(11923866-11923927)
chr1 (32-90)||(13192915-13192973)
chr1 (53-141)||(42071374-42071463)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 28287643 - 28287864
Alignment:
Q  12 agagaccgtctttcattcaaaataaaattataaggaatttttctcaattctggtggattccggaaaatctttttgacaggtttgatgcttgcaacttgtc 111  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||    
T  28287643 agagactggctttcattcaaaataaaattataaggaatttttctcaattctggtggattccggaaaatccttttgacaagtttgttgcttgcaacttatc 28287742  T
Q  112 tgtttatcttttcggtttagcgtttgttaattct---ttccgttatgcgtcaaatctttaggatatatggcatggacttgtaccataaaagagagatgaa 208  Q
    ||||||||||||   |||||||||||||||||||   ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28287743 tgtttatcttttaaatttagcgtttgttaattcttgcttccgttctgcgtcaaatctttaggatatatggcatggacttataccataaaagagagatgaa 28287842  T
Q  209 ggaagaatagtggagaactgac 230  Q
    ||||||| ||||||||||||||    
T  28287843 ggaagaagagtggagaactgac 28287864  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 2880167 - 2880219
Alignment:
Q  80 ctttttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcg 133  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||||||||    
T  2880167 ctttttgacaggtttg-tgcttgcaacttgtttgtttatcttttaggtttagcg 2880219  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 22716605 - 22716700
Alignment:
Q  53 tctcaattctggtggattccggaaa--atctttttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaattctt 146  Q
    |||||||||||||||||||||||||   | ||||||| |||||||  ||||||||| |||| |||||| |||| |||||||| |||| ||| ||||    
T  22716605 tctcaattctggtggattccggaaaccctttttttgataggtttgtcgcttgcaacctgtcagtttatattttaggtttagcttttggtaactctt 22716700  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 146
Target Start/End: Complemental strand, 22988612 - 22988517
Alignment:
Q  53 tctcaattctggtggattccggaaaatcttttt--gacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaattctt 146  Q
    |||||||||||||||||||||||||  ||||||  || |||||||  ||||||||| |||| ||||||||||| | |||||| |||| ||| ||||    
T  22988612 tctcaattctggtggattccggaaacccttttttcgataggtttgtcgcttgcaacctgtcagtttatcttttagatttagcttttggtaactctt 22988517  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 54239533 - 54239644
Alignment:
Q  32 aataaaattataaggaatttttctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggttta 130  Q
    |||||||||||   ||| ||||||||||| |||||||||||| |||  ||| ||||| |||||||   |||| |||||||||||||| || || ||||||    
T  54239533 aataaaattatcgagaacttttctcaattttggtggattccgaaaacccttatttgataggtttgtcccttgtaacttgtctgtttacctcttaggttta 54239632  T
Q  131 gcgtttgttaat 142  Q
    ||||||| ||||    
T  54239633 gcgtttgctaat 54239644  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 13085234 - 13085152
Alignment:
Q  53 tctcaattctggtggattccggaaaatctt--tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcg 133  Q
    |||||||| |||||||||||| |||  |||  ||||| |||||||  ||||||||| |||| ||||||||||| |||||||||    
T  13085234 tctcaattttggtggattccgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcg 13085152  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 32052968 - 32053078
Alignment:
Q  32 aataaaattataaggaatttttctcaattctggtggattccggaaaatctttttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttag 131  Q
    ||||||||||||   || ||||||||||||||||||||| ||||||  ||||||||||| ||||  |||||||| ||||||||||||||||| |||||||    
T  32052968 aataaaattatagaaaacttttctcaattctggtggatttcggaaaccctttttgacagatttgtcgcttgcaaattgtctgtttatcttttaggtttag 32053067  T
Q  132 cgtttgttaat 142  Q
    || ||| ||||    
T  32053068 cgcttgctaat 32053078  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 22572533 - 22572440
Alignment:
Q  50 ttttctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaat 142  Q
    ||||||||||||| ||||||||||||||  ||| ||||| || ||||  ||||||||| |||||||||||||||| ||||||||| ||| ||||    
T  22572533 ttttctcaattcttgtggattccggaaacccttatttgatagatttgtcgcttgcaacctgtctgtttatcttttaggtttagcgcttgctaat 22572440  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 31577324 - 31577243
Alignment:
Q  53 tctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcg 133  Q
    |||||||||||||||||| ||||||  ||| ||||| |||||||  ||||||||| | |||||||||||||| |||||||||    
T  31577324 tctcaattctggtggatttcggaaacccttatttgataggtttgtcgcttgcaacctatctgtttatcttttaggtttagcg 31577243  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 32936905 - 32936790
Alignment:
Q  50 ttttctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaattctt-- 146  Q
    ||||||||||| |||||||||||| |||  ||| |||||||  |||| |||||||||||||| |||||| || || |||||| |  ||| ||||||||      
T  32936905 ttttctcaattatggtggattccgaaaacccttatttgacatatttgttgcttgcaacttgtttgtttagctcttaggtttaactcttgctaattcttgc 32936806  T
Q  147 -tccgttatgcgtcaa 161  Q
     |||||||||||||||    
T  32936805 atccgttatgcgtcaa 32936790  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 8568735 - 8568642
Alignment:
Q  50 ttttctcaattctggtggattccggaaaatcttttt-gacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaat 142  Q
    |||||| |||||| |||||||||| ||| | ||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||| ||||    
T  8568735 ttttcttaattctagtggattccgaaaacttttttttgacaggtttgtagcttgcaacttgtctgtttatcttttaggtttagcgtttgctaat 8568642  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 11190446 - 11190530
Alignment:
Q  53 tctcaattctggtggattccggaaaatctttttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttg 137  Q
    |||||||||||||||||||||||||   | ||||| |||||||  ||||||||| ||||| ||||| |||| ||||||| |||||    
T  11190446 tctcaattctggtggattccggaaaccttatttgataggtttgtcgcttgcaacctgtctctttatattttaggtttagtgtttg 11190530  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 27142621 - 27142528
Alignment:
Q  50 ttttctcaattctggtggattccggaaaatcttt-ttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaat 142  Q
    ||||||||||| ||||||||||| || |  |||  ||||| ||||||  ||||||||||||||| ||||||| || ||||||||||||| ||||    
T  27142621 ttttctcaattatggtggattccagatacccttaattgactggtttgtcgcttgcaacttgtctatttatctcttaggtttagcgtttgataat 27142528  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 35160890 - 35160779
Alignment:
Q  32 aataaaattataaggaatttttctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggttta 130  Q
    |||||||||||   ||| |||||| |||||||||||| ||| ||||  ||| |||||||||||||  | |||||||||||||||||||||||| ||||||    
T  35160890 aataaaattatcgagaacttttcttaattctggtggaatcctgaaacccttatttgacaggtttgtcgtttgcaacttgtctgtttatcttttaggttta 35160791  T
Q  131 gcgtttgttaat 142  Q
    | ||||||||||    
T  35160790 gtgtttgttaat 35160779  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 7775361 - 7775454
Alignment:
Q  50 ttttctcaattctggtggattccggaaaa-tctttttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaat 142  Q
    |||||| |||||| |||||||||| |||  | |||||||||||||||  |||||||||||||||||||||||||| |||||| |||||| ||||    
T  7775361 ttttcttaattctagtggattccgaaaacctttttttgacaggtttgtagcttgcaacttgtctgtttatcttttaggtttaacgtttgctaat 7775454  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 19677272 - 19677182
Alignment:
Q  53 tctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaat 142  Q
    ||||||||||||||||||||| |||  ||| ||||| |||||||  ||||||||| | |||||||||||||| || |||||| ||| ||||    
T  19677272 tctcaattctggtggattccgaaaacccttatttgaaaggtttgtcgcttgcaacctatctgtttatcttttaggcttagcgcttgctaat 19677182  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 14504075 - 14504124
Alignment:
Q  62 tggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgt 110  Q
    |||||||||| ||||| |||| ||||||||||||| ||||||||||||||    
T  14504075 tggtggattctggaaactcttatttgacaggtttgttgcttgcaacttgt 14504124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 15385117 - 15385025
Alignment:
Q  32 aataaaattataaggaatttttctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatctttt 123  Q
    |||||||||||   ||| ||||||||||| |  |||||| |||||| |||| ||| |||| ||||  |||||| |||||||||||||||||||    
T  15385117 aataaaattatcgagaacttttctcaattttaatggatttcggaaactcttatttaacagatttgtcgcttgcgacttgtctgtttatctttt 15385025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 5841230 - 5841341
Alignment:
Q  32 aataaaattataaggaatttttctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggttta 130  Q
    |||||||||||   ||| ||||||||||||| |||||||||| |||  | | |||||||||||||  ||||||||||||| |||||||||||| ||||||    
T  5841230 aataaaattatcgagaacttttctcaattcttgtggattccgaaaacccctgtttgacaggtttgtcgcttgcaacttgtatgtttatcttttaggttta 5841329  T
Q  131 gcgtttgttaat 142  Q
    ||||||| ||||    
T  5841330 gcgtttgctaat 5841341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 8781461 - 8781541
Alignment:
Q  53 tctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcg 133  Q
    |||||||||||||||||| || |||  ||| ||||| |||||||  ||||||||| |||||||||||||||| |||||||||    
T  8781461 tctcaattctggtggatttcg-aaacccttatttgataggtttgtcgcttgcaacctgtctgtttatcttttaggtttagcg 8781541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 44675363 - 44675278
Alignment:
Q  53 tctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttg 137  Q
    ||||||||||||||||||||| |||  ||| ||||| |||| ||  ||||||||| ||||||||||||||||  |||| |||||||    
T  44675363 tctcaattctggtggattccgaaaacccttatttgataggtatgtcgcttgcaacctgtctgtttatcttttatgtttggcgtttg 44675278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 18725704 - 18725646
Alignment:
Q  83 tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaa 141  Q
    ||||| |||||||  ||||||| | ||||||||||||||||  ||||||||||||||||    
T  18725704 tttgataggtttgtcgcttgcagcctgtctgtttatcttttaagtttagcgtttgttaa 18725646  T

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Target: scaffold0251 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 8301 - 8218
Alignment:
Q  49 tttttctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttag 131  Q
    ||||||||||||||| |||||||| ||||  ||| |||||||||||||  |||||||||||||||||||||||| | |||||||    
T  8301 tttttctcaattctgatggattccagaaacccttatttgacaggtttgtcgcttgcaacttgtctgtttatcttctaggtttag 8218  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 9295260 - 9295367
Alignment:
Q  32 aataaaattataaggaatttttctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggttta 130  Q
    |||||||||||   ||| ||||||||||||||||||||||| |||| || | |||||||| ||||  ||||||||||||||||||||||| || | ||||    
T  9295260 aataaaattatcgagaacttttctcaattctggtggattccagaaactcatatttgacagatttgtcgcttgcaacttgtctgtttatctcttagattta 9295359  T
Q  131 gcgtttgt 138  Q
    ||| ||||    
T  9295360 gcgcttgt 9295367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 15081497 - 15081608
Alignment:
Q  32 aataaaattataaggaatttttctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggttta 130  Q
    |||||||||||   ||| ||||||||||||| |||||||| |||||   || |||||||||||||  ||||||||||||| ||||||||| ||  |||||    
T  15081497 aataaaattatcgagaacttttctcaattcttgtggattctggaaacctttatttgacaggtttgtcgcttgcaacttgtgtgtttatctcttatgttta 15081596  T
Q  131 gcgtttgttaat 142  Q
    ||||||||||||    
T  15081597 gcgtttgttaat 15081608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 18180825 - 18180743
Alignment:
Q  53 tctcaattctggtggattccggaaaatct--ttttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcg 133  Q
    ||||||||||||||||||| |||||  ||  |||||| |||||||  ||||||||| |||| ||||||| ||| |||||||||    
T  18180825 tctcaattctggtggattctggaaacccttattttgataggtttgtcgcttgcaacatgtcagtttatcctttaggtttagcg 18180743  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 1151147 - 1151220
Alignment:
Q  50 ttttctcaattctggtggattccggaaaatctttttgacaggtttgatgcttgc-aacttgtctgtttatctttt 123  Q
    ||||||||||||||||||||||| ||||| | |||||| ||||||| ||||||| ||||||||||||||||||||    
T  1151147 ttttctcaattctggtggattcc-gaaaacccttttgataggtttgttgcttgcaaacttgtctgtttatctttt 1151220  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 25340227 - 25340134
Alignment:
Q  50 ttttctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaat 142  Q
    ||||||||||| || |||||||| ||||  ||| ||||| ||||||| ||| |||||| |||||||||||||||| |||||| |||||||||||    
T  25340227 ttttctcaattatgatggattccagaaacccttatttgataggtttgttgcgtgcaacctgtctgtttatcttttaggtttaacgtttgttaat 25340134  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 20398545 - 20398447
Alignment:
Q  49 tttttctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaattctt 146  Q
    ||||||||||||||||||||||||| |||  ||| ||||| ||  |||  ||||||||| |||||| ||||||||| ||||||||| ||| ||||||||    
T  20398545 tttttctcaattctggtggattccgaaaacccttatttgatagacttgtcgcttgcaacctgtctgattatcttttaggtttagcgcttgctaattctt 20398447  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 4580510 - 4580591
Alignment:
Q  53 tctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcg 133  Q
    |||||||||| |||||||| | |||  ||| ||||| |||||||  ||||||||| ||| |||||||||||| |||||||||    
T  4580510 tctcaattctagtggattctgaaaacccttatttgataggtttgtcgcttgcaacctgtgtgtttatcttttaggtttagcg 4580591  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 19949950 - 19950031
Alignment:
Q  53 tctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcg 133  Q
    ||||||||||| ||||||||  |||  ||| ||||| | |||||  ||||||||||| |||||||||||||| |||||||||    
T  19949950 tctcaattctgatggattccaaaaacccttatttgataagtttgtcgcttgcaacttatctgtttatcttttaggtttagcg 19950031  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 41218751 - 41218832
Alignment:
Q  53 tctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcg 133  Q
    |||||||||||||||||||||||||  ||| ||||| |||||||  |||| |||| | ||| |||||||||| | |||||||    
T  41218751 tctcaattctggtggattccggaaagccttatttgataggtttgtcgcttacaacctatctatttatcttttagatttagcg 41218832  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 45085694 - 45085782
Alignment:
Q  53 tctcaattctggtggattccggaaaatctttttgacagg-tttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgtta 140  Q
    |||||||||||||||||| || ||| |||| ||| ||   ||||  |||||||||||||||||||||||||| |||||||| |||||||    
T  45085694 tctcaattctggtggatttcgaaaactcttattgtcaatatttgtcgcttgcaacttgtctgtttatcttttaggtttagcttttgtta 45085782  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 11923866 - 11923927
Alignment:
Q  81 tttttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaat 142  Q
    |||||||||||||||  |||| ||| ||||||||||||||||| |||||| |||||| ||||    
T  11923866 tttttgacaggtttgtagcttacaaattgtctgtttatcttttaggtttaacgtttgctaat 11923927  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 13192973 - 13192915
Alignment:
Q  32 aataaaattataaggaatttttctcaattctggtggattccggaaaatctttttgacag 90  Q
    |||||| |||||  ||| ||||||||||||||||||||||| ||||  |||||||||||    
T  13192973 aataaatttatagagaagttttctcaattctggtggattccagaaaccctttttgacag 13192915  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 42071463 - 42071374
Alignment:
Q  53 tctcaattctggtggattccggaaaatctt-tttgacaggtttgatgcttgcaacttgtctgtttatcttttcggtttagcgtttgttaa 141  Q
    |||||||| || |||||||| ||||  ||| ||||| |||||||   |||| ||| |||||||||||||||| ||||||||| |||||||    
T  42071463 tctcaattatgatggattccagaaacgcttatttgataggtttgtcacttgtaacatgtctgtttatcttttaggtttagcgcttgttaa 42071374  T

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